Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_024354.1 Length=149162 Score E Sequences producing significant alignments: (Bits) Value seq2788 266 3e-66 >seq2788 Length=136445 Score = 266 bits (294), Expect = 3e-66 Identities = 307/410 (75%), Gaps = 4/410 (1%) Strand=Plus/Plus Query 118889 GATGTCATCAAAGACGATCGACGGATCTGCCAGGATGTTACGGATGATATGGGTGTATGA 118948 ||| || ||||| || | |||||||| | ||| ||||| || ||||| ||||| || Sbjct 17467 GATATCGTCAAACACCAGTGACGGATCGTTGACGATATTACGAATAATATGCGTGTACGA 17526 Query 118949 GCGAGAGTGGATAGTCTCACTGAACGCCCAAGTCTCTACCCATGTTTCCAGGGTTGTGTC 119008 ||| |||||||||||||| ||||||||| ||||| ||||| || || || || Sbjct 17527 GCGTGAGTGGATAGTCTCGGAGAACGCCCAGGTCTCAACCCAGGTCTCAAGCTCTGGAAT 17586 Query 119009 GGACACGATCGGGAGCAGAACTGCGTTCGGCCCACGGCCCTGTACAGAATCCAGAAGGAT 119068 ||| | | ||| || || | |||| || | ||||||||| | || ||||| || | Sbjct 17587 GGAGATCAGCGGCAGTAGCGCCACGTTAGGGCTACGGCCCTGAATCGAGTCCAGCAGCGT 17646 Query 119069 CTGGTACTTCAGGTTGCTGATGAAGATGTGCTTCTCGTGATCCGGCAGATTCATGTAGTC 119128 ||| |||||||||||||| | ||| ||||| || || || ||||||||| | | |||| Sbjct 17647 CTGATACTTCAGGTTGCTCAGGAAAATGTGTTTTTCATGCTCCGGCAGACCCTGGAAGTC 17706 Query 119129 GATACGGTCACGGGTCACGTTAACTTCTTCCGGACGCCAGAAGAACGCCAGTTGCTTCTC 119188 |||||||||||||| |||| |||||||||||||||||||||||| | ||| ||||| || Sbjct 17707 GATACGGTCACGGGCAACGTCAACTTCTTCCGGACGCCAGAAGAAGGACAGCTGCTTTTC 17766 Query 119189 GATCAGCTTCTCGAACTTGGCGTGTTTCTGCTGGTCATAGCGAGAAACGTTCGGTGTCTC 119248 |||||| || ||||| | | | |||||||||||| |||| | ||||| | || Sbjct 17767 GATCAGTTTTTCGAAGATTTCATATTTCTGCTGGTCGAAGCGCGCCACGTTAACCGACTG 17826 Query 119249 GCCGAGGAACATCGGCT-GAGTCAGGAAGTCGAATTTGTTCTGGTTGAAA 119297 |||| ||||||||||| ||| ||| |||| |||||| || ||||| Sbjct 17827 ACCGAAGAACATCGGCTCGAG-CAGCTGGTCGTTTTTGTTTTG--TGAAA 17873 Score = 118 bits (130), Expect = 1e-21 Identities = 365/560 (65%), Gaps = 45/560 (8%) Strand=Plus/Plus Query 120101 GTCGATCGGCAGAATGCCCTGAGAGTAAGTGGTCTCGTGGAAGAGATCACATTTACCCAA 120160 ||||||||||||||| ||||| |||||||||||||| | ||| || ||| Sbjct 18516 GTCGATCGGCAGAATTCCCTGCGAGTAAGTGGTCTCTTTGAACCATGGGCAGGCACCTTG 18575 Query 120161 TTCTTTTGCCAGGTCAACCGACGCTTCCAGTAGGTAATACTGGAATGCTTCAGCCAGTTC 120220 || ||||| || || |||| ||| ||||| ||||| | ||||| | Sbjct 18576 CTCACGCGCCAGTTCGTTAGAGGCTTTCAGCAGGTAGTACTGAATCGCTTCGAACGCGCG 18635 Query 120221 GTGAA-CAG--CGTT--CGCTGCACGAGGGTCGCTGTATTTCAGGCCACGCTTCGCCAGG 120275 |||| ||| |||| |||||| ||||||||| || ||| ||| ||||| Sbjct 18636 GTGAGTCAGGGCGTTGGCGCTGCC-----GTCGCTGTAACGCACGCCGTTCTTGGCCAGA 18690 Query 120276 TAGTATGCTAAGTTGGTCCAGCCAATACCCAGAGTACGTCG--CAGTTTAGTCTTCTCT- 120332 || || || ||||| | |||||||||||| ||||| || | || | | | | Sbjct 18691 TAATAAGCATAGTTGATAACGCCAATACCCAGCGTACGGCGGCCCATTGCGCCGCGTTTA 18750 Query 120333 GCCGCCAGAACCGGATAGTTCTGATAATCTAACAGACGATCCAATGCACGAAC--CAGTG 120390 || ||||| | || || | ||||||||| | ||| || | ||||| || || | Sbjct 18751 GCGGCCAGGATTGGGTAATCCTGATAATCGAGCAGGGCGTCAAGCGCACGCACTGCAAGG 18810 Query 120391 TACGGACAGGCTCACGCATGTCTTCCAGCTTCTCCACCTTGCCGAGGTTGATGGCAGACA 120450 || ||| ||| | || ||||| | || | ||||||||||| |||||||| Sbjct 18811 GTCGC-CAG-CTCTTCGAGATCATCCAGGCTTTCGATAGCGCCGAGGTTGAAGGCAGACA 18868 Query 120451 GAGTACACAGGGCCACTTCCCCCGG---GTCGTTCGGGTCATTAA--------------- 120492 | ||||| || || | |||||| ||||||| |||||| | Sbjct 18869 GCGTACAAAGCGCGATTTCCCCTTCTTCGTCGTTCACGTCATTTAACGGCTTTTGTGGGC 18928 Query 120493 ------TGTCCGTAAT----CGGATGTGTCGGCAGGGCGATTTCCATGCACAGGTTGGAC 120542 | || | || ||| | || ||||| |||||||| | ||||||||||||| Sbjct 18929 GCGCGGTTTCANTCATTTAACGGCTTGGTTGGCAGCGCGATTTCAAGGCACAGGTTGGAC 18988 Query 120543 TGTTTCACCGGGGCCTGTTCGGGGTCGAACGGGCTATTAGTGTTGCAGTGGTCAACGTGC 120602 || ||||| || ||||||| |||||||||| ||||||||||||||||||||| Sbjct 18989 TGGCGAACCGGTGCAATAGCGGGGTCAAACGGGCTATGGGTGTTGCAGTGGTCAACGTGC 19048 Query 120603 TGCACGTAAATACGGCCTGT 120622 || | || |||||||| || Sbjct 19049 TGAATATAGATACGGCCGGT 19068 Score = 114 bits (126), Expect = 1e-20 Identities = 295/442 (67%), Gaps = 17/442 (4%) Strand=Plus/Plus Query 118331 GTTGATCCACGGAATCGGGTTCTTGGTCGGCTTACCGATCAGTTCACCCAGGCCAACCGC 118390 ||||||||| || |||||||| | | ||| || | || || ||| || || || Sbjct 16879 GTTGATCCATGGGATCGGGTTTGAGCGAGTCTT---GAACGGTGCAGTCAGACCCACGGC 16935 Query 118391 TCGCATACGCTGGTCGGTGATGTAGTCGATGTAACCGTCCAGCATACCTTTGTTCAGGCC 118450 ||||||| || ||||||||| |||||||| | || || ||||||||||||| Sbjct 16936 CTGCATACGGATGTTGGTGATGTATTCGATGTACTGGCAAAGAATGTCTTTGTTCAGGCC 16995 Query 118451 GATCATCGAACCGTCTTTGAACAGGAAG-CTGCCCCAGTCTTTCTCCTGCACCGATGCGT 118509 ||||||||| ||||| ||| || | |||||| |||||||||| ||| | |||| Sbjct 16996 GATCATCGAGCCGTCGCGGAAAAGATATTCTGCCC-AGTCTTTCTCTTGCTC---TGCGG 17051 Query 118510 CGATAAAGCCCTG-TCGTGCC--TCTTCGTAGCAATCTTCTGCCACACGTGCAAA---CA 118563 | | | | | | || | | |||| | ||| |||| || | || | | Sbjct 17052 CCAGCACGAACAGGTCATAACACTCTTTCTCGCACTCTTTGGCGATGATGGCCATTTCCG 17111 Query 118564 GGTCACCTTCGTTACCGTTCTGCATTTCTTTCAGCATATACTGAGTTCCGGACAAATGCA 118623 ||||| ||| |||| ||| |||||| | |||||| |||| || || | Sbjct 17112 GGTCA---TCGGCACCGGAGCGCAGCAGGTTCAGCGCGTGCTGAGTCCCGGTCAGGTGGA 17168 Query 118624 AGGCTTCATCACGAGCAATCAGTTCAATAATGTTGGTGTTACCCAGCATTACGCCGCGCT 118683 ||||| || || || || || | || || || | ||||| ||| | |||| | Sbjct 17169 GCGCTTCGTCGCGGGCGATAAGCTTGATGATTTTTGCATTACCTTCCATCAGCTCGCGTT 17228 Query 118684 CACCGAAAGCGAAGGAGCAGGCGAAGCTCACGTAGAAACGGATCGCTTCCAGTGCATTGA 118743 | |||| || || || ||||||||||| ||||||||||| | |||||||| ||||||| Sbjct 17229 CTGCGAAGGCAAATGAACAGGCGAAGCTGACGTAGAAACGCACGGCTTCCAGCGCATTGA 17288 Query 118744 TGTTGTGCAGACACAGATACAG 118765 | | ||| |||||||| || Sbjct 17289 CGCTCATCAGGCACAGATAGAG 17310 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 120819 TACAGCATTTTGTTCAACTGAAGTCCGTAGTCCACATGGCGAGCACGAGTGCTCTCAGTA 120878 |||| || |||||| | ||| | |||||||||| || ||| | || ||| ||| | Sbjct 19262 TACATCAGTTTGTTGATCTGCACGCCGTAGTCCATGTGACGAACGCGGTTGCCTTCAACA 19321 Query 120879 CCACGGTTGTTCTTCAGCACAATCAGGCTTTCAAAATCCCAGTGCCACATCGGATAAAA 120937 ||||||||||| ||||| || | ||||||||||| ||| |||||||||||| || || Sbjct 19322 CCACGGTTGTTTTTCAGAACCAGCAGGCTTTCAACTTCCAGGTGCCACATCGGGTAGAA 19380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476361007295520