Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq88566 178 3e-39 seq123102 165 2e-35 seq119770 158 2e-33 seq21876 132 9e-26 seq138766 127 4e-24 >seq88566 Length=1870 Score = 178 bits (196), Expect = 3e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| | ||||| ||||| |||| |||||||| || || || ||||||||| Sbjct 230 CCTCCTCTGAGACGCAATACTAAATGCAACGTAGATTCCTTTTGAATGTTATAATCACCC 289 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | ||| |||||||| || ||||| |||||||| |||| | ||| |||||||| || Sbjct 290 AAAGTTCGTCCGTCTTCCAGCTGTTTGCCAGCAAAAATTAAACGTTGCTGATCTGGTGGA 349 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||||||||||||||| ||||| |||| |||||| ||||| |||||| || Sbjct 350 ATTCCTTCCTTATCTTGAATCTTGGCTTTGACATGTTCAATAGTATCGGAAGGTTCAACC 409 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || | || || || || || || | || || || ||||| |||||| Sbjct 410 TCAAGTGTGATGGTTTTACCCGTAAGGGTTTTAACGAATATTTGCATT 457 >seq123102 Length=1410 Score = 165 bits (182), Expect = 2e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||||||||| ||||| || || ||||| || || || || ||||| | Sbjct 588 TACCACCCCGCAGACGCAGAACCAAGTGAAGTGTTGATTCCTTTTGAATGTTGTAATCGG 647 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | || || || || || || || || || |||| | |||||| ||||| | Sbjct 648 ATAATGTGCGTCCATCCTCAAGCTGCTTGCCGGCGAAAATTAAACGTTGTTGGTCTGGGG 707 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||||||||||||||| |||||||| || || || || ||||| |||||| | Sbjct 708 GAATGCCTTCCTTATCTTGAATTTTTGCTTTAACGTTCTCGATGGTATCCGAAGGTTCAA 767 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| || || || ||||| ||||| || || |||||||| ||||| Sbjct 768 CTTCCAATGTGATAGTTTTGCCAGTCAATGTTTTAACAAATATTTGCAT 816 Score = 154 bits (170), Expect = 3e-32 Identities = 147/188 (78%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 ||||| |||| |||||||| ||||| ||||||||||| || | | | || || ||| Sbjct 836 ACTAAATGCAATGTAGATTCCTTCTGAATATTATAATCGGACAATGTGCGTCCATCCTCT 895 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 | ||||| ||||| || || | | |||||||||||| || |||||||| ||||||||| Sbjct 896 AACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGGATTCCTTCTTTATCTTGA 955 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 || || ||||| ||||||||||| |||||| ||| || || |||||||| || || || Sbjct 956 ATTTTAGCTTTAACATTTTCAATGGTATCAGAAGGCTCAACCTCCAAAGTGATGGTTTTT 1015 Query 82782 CCTGTCAA 82789 || ||||| Sbjct 1016 CCCGTCAA 1023 Score = 89.7 bits (98), Expect = 1e-12 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 82710 TCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAA 82769 || || || || ||||| ||||||||||||||||| ||||| ||||| || |||| | Sbjct 1216 TCTTTGTCCTGGATCTTGGCTTTTACATTTTCAATAGTATCGGATGGTTCAACCTCCAGA 1275 Query 82770 GTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || |||||||| ||||| ||||| || || || |||||| Sbjct 1276 GTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATT 1317 >seq119770 Length=1537 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||||| || | ||| || || |||||||| || ||||| || || | Sbjct 864 TACCACCACGTAGACGCAATACCAGGTGAAGTGTTGATTCTTTTTGAATATTGTAGTCGG 923 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||||| | | || ||||||| ||||||||| || || || || | |||||||||||| | Sbjct 924 ATAGAGTACGTCCATCTTCTAATTGTTTTCCGGCGAAAATAAGACGTTGTTGATCTGGTG 983 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| ||||| |||||||| ||||| ||||||||||| || ||| || || | Sbjct 984 GAATACCTTCTTTATCCTGAATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGCTCCA 1043 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | || || || || |||||||| || | || || || || || |||||| Sbjct 1044 CCTCTAAGGTGATGGTCTTGCCAGTTAGTGTTTTGACGAAAATTTGCATT 1093 >seq21876 Length=2391 Score = 132 bits (146), Expect = 9e-26 Identities = 124/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 ||||| || ||||| || ||||| ||||||| | ||||||||||||||| || |||||| Sbjct 897 CCGTCCTCCAGTTGCTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGGAATACCTTCC 838 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 || || |||||||| ||||| || || ||||| || || || || ||||| ||||| Sbjct 837 TTGTCCTGAATCTTAGCTTTGACGTTCTCAATAGTGTCGGATGGCTCGACTTCTAAAGTG 778 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || |||||||| || ||||| || || ||||| Sbjct 777 ATAGTTTTCCCTGTCAAAGTTTTTACGAAGATTTGCAT 740 >seq138766 Length=1258 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | | | |||||| | || | ||||| |||||||||||||| ||||| | Sbjct 868 TACCTCCACGAAGCCTCAGAACAAGATGGATTGTAGACTCTTTCTGTATATTGTAATCGG 809 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || |||| || || || || || || ||||||||||| ||||| || |||||||| | Sbjct 808 AAAGTGTTCTTCCATCCTCAAGCTGCTTACCAGCAAAGATCAGTCTCTGCTGATCTGGTG 749 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || || ||||| || || || || || ||||| |||| | || || || | Sbjct 748 GAATCCCCTCTTTATCCTGTATTTTGGCCTTGACATTCTCAACATTTTCGGATGGCTCCA 689 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | |||| ||||| || || || || | || ||||| || || |||||| Sbjct 688 CCTCCAGTGTTATTGTTTTTCCCGTTAGTGTTTTTACGAAGATTTGCATT 639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980078048456594