Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq138766 96.9 3e-15 seq21876 96.9 3e-15 seq123102 87.8 2e-12 >seq138766 Length=1258 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| || || |||||||||||||||||||||||| | || ||||| ||||| Sbjct 843 ATGGATTGTAGACTCTTTCTGTATATTGTAATCGGAAAGTGTTCTTCCATCCTCAAGCTG 784 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||| || || | || || | |||||| || || || || || || || || || | || Sbjct 783 CTTACCAGCAAAGATCAGTCTCTGCTGATCTGGTGGAATCCCCTCTTTATCC-TG-TATT 726 Query 133577 TTG--CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 ||| ||||| | |||||| | |||| |||||||| || | || | ||||| || Sbjct 725 TTGGCCTTGACATTCTCAACATTTTCGGATGGCTCCACCTCCAGTGTTATTGTTTTTCCC 666 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||||||||| || ||||| Sbjct 665 GTTAGTGTTTTTACGAAGATTTGCAT 640 >seq21876 Length=2391 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||| || |||||||| ||| | || | || || || || ||||| || |||||||| Sbjct 895 GTCCTCCAGTTGCTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGGAATACCTTCCTT 836 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| ||||| |||| | ||||| ||||||| ||||| || || | |||| Sbjct 835 GTCCTGAATCTTAGCTTTGACGTTCTCAATAGTGTCGGATGGCTCGACTTCTAAAGTGAT 776 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || |||| |||||||||||| || ||||| Sbjct 775 AGTTTTCCCTGTCAAAGTTTTTACGAAGATTTGCAT 740 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || || || ||||| || ||||||||| || || | | | || || | Sbjct 717 AAATGAAGCGTTGATTCCTTCTGAATGTTGTAATCGGACAAGGTACGGCCA-TCTTCCAA 659 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||||| ||| | || | |||||||| || || || || || |||||||| ||| Sbjct 658 TTGCTTGCCGGCGAAGATTAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGGAT 599 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | || | ||||| | ||||| || || | ||||| || ||||| Sbjct 598 CTTAGCCTTAACGTTTTCGATGGTGTCAGACGGCTCAACTTCCAGGGTGATAGTCTTGCC 539 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| |||||||||||| || ||||| Sbjct 538 AGTCAAAGTTTTTACGAAGATTTGCAT 512 >seq123102 Length=1410 Score = 87.8 bits (96), Expect = 2e-12 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || || || || || ||||||||| | ||| | | | ||||| ||||||||||| Sbjct 620 GTTGATTCCTTTTGAATGTTGTAATCGGATAATGTGCGTCCA-TCCTCAAGCTGCTTGCC 678 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| | || || ||||| || || ||||||||||| || ||| |||||||| Sbjct 679 GGCGAAAATTAAACGTTGTTGGTCTGGGGGAATGCCTTCCTTATC-TTGAATTTTTGCTT 737 Query 133583 GAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | || || | || || || || | |||| |||||||| |||| | Sbjct 738 TAACGTTCTCGATGGTATCCGAAGGTTCAACTTCCAATGTGATAGTTTTGCCAGTCAATG 797 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| || || || ||||| Sbjct 798 TTTTAACAAATATTTGCAT 816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482580578393040