Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq43985 141 2e-28 seq134203 111 4e-19 seq4845 96.9 8e-15 seq103337 87.8 4e-12 seq31628 84.2 5e-11 >seq43985 Length=4878 Score = 141 bits (156), Expect = 2e-28 Identities = 267/388 (69%), Gaps = 10/388 (3%) Strand=Plus/Plus Query 110772 GAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAA 110831 ||||| |||||| |||||||||||||||| || || | |||||| || ||| Sbjct 1364 GAACCATGGCATGCAGATATATTTGAATTTTTGGATTTAAAGAAAAATACTGGCACAGAA 1423 Query 110832 GAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGT 110891 || || ||||| | ||||||||||||||| | |||||| ||||| | || ||||||||| Sbjct 1424 GAGCATAGAGCTAGAGATTTATTTTATGCATTATGGATTCCAGATCTTTTTATGAAACGT 1483 Query 110892 GTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGAT 110951 ||| ||| |||| ||||| ||||||||||| || | ||| || | ||| Sbjct 1484 GTTGAAGCTAATGAAGATTGGTCGCTTATGTGTCCACACAAGTGTCCCGGCTTGCATGAG 1543 Query 110952 GTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGC 111011 |||| || | || |||||| | | || |||||||| |||| || | | ||| Sbjct 1544 GTATGGGGCGATGAATTTGAAAAATTATATACTAAATATGAGCAAGACGG-ACG---CGC 1599 Query 111012 ----AAACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAAC 111067 || || | ||| ||| |||||||| || ||||||| ||||| || || Sbjct 1600 TAATAAGAAAGTAAAAGCACAAAGTCTTTGGTTTGCCATTATTGAATCGCAAGTAGAGAC 1659 Query 111068 TGGAACTCCTTATATTTTGTATAAAGAT-CATATTAATCGCAAATCTAATCAAATGAATT 111126 || || || ||||| |||| || ||| ||| |||| | || ||||||| ||| Sbjct 1660 AGGCACACCATATATGCTGTACAAGGATGCAT-GTAATAGAAAGAGTAATCAACAAAATA 1718 Query 111127 TAGGAACAATTAAGTCTAGTAATTTGTG 111154 | || || ||||| | ||||||||| || Sbjct 1719 TTGGCACTATTAAATGTAGTAATTTATG 1746 Score = 102 bits (112), Expect = 2e-16 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 110285 TCGTGACTATGATATTGACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCG 110344 |||||| | || | | | ||||||||||| ||||| || |||||| ||||||||||| Sbjct 845 TCGTGATTTTGGTTATAATTATTTTGGTTTTAAAACGCTGGAACGTTCTTATTTACTTAA 904 Query 110345 TGTCAATGGCGAGATCATTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTAT 110404 | ||||| | || |||| ||||| || || ||||| | || || | |||||||| Sbjct 905 ACTGAATGGTAAAATTGTTGAGCGTCCACAGCATATGTTAATGCGCGTATCCATTGGTAT 964 Query 110405 TCATGGACATGATATTAAAGCTGTTATTGAA 110435 || ||| | |||||| | |||||||||||| Sbjct 965 ACACGGAGAGGATATTGATGCTGTTATTGAA 995 >seq134203 Length=1489 Score = 111 bits (122), Expect = 4e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 || || |||||| | ||||| || ||||||||||||||||| ||| |||| | | |||| Sbjct 345 GTACTATTCAATCGTCAACCTTCCCTGCATAAAATGTCTATTATGTGTCATCAGGCCAAA 286 Query 305390 GTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGAT 305449 || | | | ||||| || || |||| | | || ||||| || || ||||| ||| Sbjct 285 GTGCAACCACAACGTACATTCCGTTTTAATGAATGCGCGTGTACACCATACAATGCTGAT 226 Query 305450 TTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 |||||||| |||||||||||| | ||| |||| ||| Sbjct 225 TTTGATGGTGATGAAATGAATTTACATTTACCACAA 190 >seq4845 Length=5268 Score = 96.9 bits (106), Expect = 8e-15 Identities = 134/185 (72%), Gaps = 6/185 (3%) Strand=Plus/Minus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 |||||||| ||| |||||| ||| | |||||| | ||||| |||| ||||||||| Sbjct 3878 AGACATTTACGTGATGATGATTTAGTTATTTTCAATCGTCAACCGACACTACATAAAATG 3819 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGT 305425 |||||||| ||| || |||||||| || | | ||||| || | ||| | || Sbjct 3818 AGTATGATGGGGCATCGTGTTAAAGTATTGCCTTGGTCTACATTCCGTATGAATTT--GT 3761 Query 305426 GCTTGTACG---CCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCT 305482 | ||||| || ||||| || || ||||| || ||||||||||| ||||||| || Sbjct 3760 -CATGTACTTCACCATATAACGCTGACTTTGACGGTGATGAAATGAACTTGCATGTGCCA 3702 Query 305483 CAATC 305487 ||||| Sbjct 3701 CAATC 3697 >seq103337 Length=3927 Score = 87.8 bits (96), Expect = 4e-12 Identities = 122/170 (72%), Gaps = 6/170 (4%) Strand=Plus/Plus Query 305318 GACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCT 305377 || ||||||| || | || ||| |||| ||| || |||| |||||||| ||||||| Sbjct 2627 GATAATGATTTAGTGATTTTTAATCGGCAGCCAACATTGCACAAAATGTCAATGATGGGA 2686 Query 305378 CATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCT 305437 ||| |||||||| || | | | ||||| || | || | | | ||||| || Sbjct 2687 CATCGTGTCAAAGTGTTGCCGTGGTCTACATTCCGTATGAACCT---TTCATGTACCACT 2743 Query 305438 ---TATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCA 305484 |||||||| ||||| ||||| |||||||||||| | |||||||| || Sbjct 2744 CCCTATAATGCTGATTTCGATGGCGATGAAATGAATTTACATGTACCACA 2793 >seq31628 Length=8758 Score = 84.2 bits (92), Expect = 5e-11 Identities = 179/263 (68%), Gaps = 6/263 (2%) Strand=Plus/Minus Query 279875 GATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAAGAAAATTGGTA 279934 |||||||| ||||| || |||||| |||| || | ||||| ||| | || || | Sbjct 5730 GATGGTTTCAAACCAGGGCAACGTAAGGTTATGTTTACATGTTTTAAACGTAA--TGACA 5673 Query 279935 AAGG--AAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATG-CAGGTTATCAT 279991 || | || || || || || ||| | |||| || | ||| ||| | | |||||| Sbjct 5672 AACGTGAAGTTAAAGTGGCACAATTATCCGGTTCAGTGGCTGAA-ATGTCTGCCTATCAT 5614 Query 279992 CACGGTGAAGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATTTTATGGCTTCA 280051 || |||||| || || |||| | | ||||| | | || ||| | | | | | |||| Sbjct 5613 CATGGTGAAATTTCACTACAAGCTACCATTGTTAATTTGGCACAAAACTATGTCGGTTCA 5554 Query 280052 AACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGTATTCACAATGGAAAA 280111 ||||| ||||| | | |||| ||||||||| ||| | ||| | || ||||||| Sbjct 5553 AACAATATAAATTTATTAGAACCACGTGGTCAATTCGGTACACGTTTACAAGGTGGAAAA 5494 Query 280112 GATCATGGTAGTGCTCGTTACAT 280134 ||| || ||||||||||| || Sbjct 5493 GATTGTGCGAGTGCTCGTTATAT 5471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1184698461101206