Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_024783.1 Length=44332 Score E Sequences producing significant alignments: (Bits) Value seq139038 279 1e-70 >seq139038 Length=11747 Score = 279 bits (308), Expect = 1e-70 Identities = 873/1327 (66%), Gaps = 55/1327 (4%) Strand=Plus/Minus Query 27973 CGACGCTCGGCGACCAATTCATCCAGTGTCCCGCGCGCCTGGATAATGTAGACGAATACC 28032 || ||||| ||||| | ||| || || || ||| ||||| || | | | || || || Sbjct 10843 CGGCGCTCCGCGACGACTTCGTCGAGCGTACCGGCAGCCTGTATCAAGAACACAAAAACT 10784 Query 28033 GGTCGAGGGTGTCCGGCCTGCATCTGGCGAACCGGCCCGATACGTTCAACGATCTGCGAA 28092 || || || || || ||||| || || || ||||| || ||||| |||||||||||| Sbjct 10783 GGCCGTGGATGGCCCGCCTGATGTTGTCGCACTGGCCCTATTCGTTCGACGATCTGCGAA 10724 Query 28093 AAGTGCTCAAAGTTCCAGGTATCGGAGAAGATTGCCAGGTGATGTCCGCCGTCCTGCAAG 28152 ||| || |||||||| ||||| || | ||||| || ||||||||||| |||||| Sbjct 10723 TAGTATTCCAAGTTCCACGTATCACTAAAAACGGCCAGATGGTGTCCGCCGTCTTGCAAG 10664 Query 28153 TTAAGGCCGTGGCCTGCCGATGCCGGGTGTGCAAACATGATGGGGATCTCGCCCCTGTTC 28212 ||||||||||| || || |||||||| || || | || ||||||| || |||| Sbjct 10663 TTAAGGCCGTGCCCGGCGCTGGCCGGGTGAGCCAATAGCATAGGGATCTTCCCTTGGTTC 10604 Query 28213 CACGCTTCCATA-TCCTTATTGCCCTGCTTACCTTTACCCAACGCAACGCCGTGCGGAAA 28271 ||| || ||| | | |||| | |||||||| |||| || ||| | | || || Sbjct 10603 CACAGCTCGATATTGCGGGTTGCGGT-TTTACCTTTGCCCAGTGCCACGGCCTCGGGGAA 10545 Query 28272 TTTCTTCTTAAGACGTGCCAGGTCATGCTTATACTGATACGCAACGAGCAACGGCGCGCC 28331 ||||||| | ||| || ||||||| ||| | ||| || || | || ||||| || Sbjct 10544 TTTCTTCAGGATGCGTTCCCGGTCATGGCGATAGTAATAGGCCACTAACAGTGGCGCACC 10485 Query 28332 GTTCAACTCCTCCACGATACTTTCCAGCGCGTCCAGTTTGGCGTCGTGAATCTTCACCCA 28391 ||| | ||| || ||| || ||||||||||| || ||| ||||| | |||| Sbjct 10484 GTTGAGCTCTTCATAAATAGACTCGAGCGCGTCCAGCTTCTCGTTATGAATAAGCTCCCA 10425 Query 28392 CTCGTCGGTCCGTTCGCCGTCTTCGTCCACCTTATACACAGCGCCGGAAGCAAGCTGAAG 28451 || | ||| | || ||||| |||| | ||| || || |||||||| | ||| | Sbjct 10424 GTCACCTGTCGGCTCACCGTCGGCGTCGGTCACATAAACGGCACCGGAAGCTATCTGCAA 10365 Query 28452 GCACTTAATTGTCTTCGATGCCGCGTTCGCCGCTTCCACTGTTCCGCT-TTCCAGTTCGG 28510 ||| ||| ||||| | ||||| || | || || ||| |||| || || || |||| Sbjct 10364 GCATTTAGCCGTCTTGGCCGCCGCATTAACGGCGTCGACT-TTCCCCTCATCGAGATCGG 10306 Query 28511 CAAATAGCTCGCTT-TCAAACTGGTCGTAAATCTTGCGGGCTTTCTTCGGCAGGTCCACA 28569 | ||| |||| | | | ||| || | || | ||||| ||||||| || Sbjct 10305 CCTTCAGC-AGCTTCACCATATCGTCATAGACTTTTTGCGCTTTACGGGGCAGGTAGACC 10247 Query 28570 ACAACCGG-CGTATAGATTGGCTTGTCGCACCCGAAGTATTCAGCCGCGTCAACGGTGAG 28628 | ||| || | || | || || || |||||||||| || |||||| || || || Sbjct 10246 GGACGCGGAACTACA-ATCGCCTCTTCACAACCGAAGTATTTAGACGCGTCTACCGTCAG 10188 Query 28629 GGATACATCTGACA---GACGTTGTTGTATCTCTT----TCTCGGAGTTCTTTAGCGGAG 28681 || | || | || ||| ||| || || |||||| | | | | | Sbjct 10187 CGAGATGTCGGCCAATGCACGATGTATGCGCTGTTCTGATCTCGGCATGGGTATGAG--G 10130 Query 28682 CGTGCTGCATAGTGAAGCTGCCAGGCTTAACAGGCTTGCTAATGAACCAGCGGTCGGTAA 28741 | | || || | |||| | ||||| |||| |||| | ||||| | | Sbjct 10129 TCTACGGCGTATT--TGCTGTC-GGCTT--TTTGCTTCGAGGTGAAATACCGGTCTTTGA 10075 Query 28742 ATGC-CTTATAGCTACTGCCGAGGCGTTCGCCTCCGTCGACAAACCACGTCTGACCCCAT 28800 | || | | || | |||| || || |||| | || | |||||| |||||||||| Sbjct 10074 ACGCGGTGAAAGAT-GTGCCCAGACGCGCGCCAGCATCTATAAACCAGTTCTGACCCCAA 10016 Query 28801 AAGTCTTTAAGCCCGTTTGGCGCTGGTGTGCCGGTAAGGTT-----AAT-CCAGCGCTTG 28854 | || || |||||||||| || || || || || | ||| ||| || | ||| Sbjct 10015 AGATCCTTGAGCCCGTTTGTAGCGGGCGTACCCGTTAAGTTCCACCAATACCGGACTTTG 9956 Query 28855 ACG------TGTTTATGTGCAATCGCCGCCAGTGCGCGGGCGCGCTT-GCTCCCCTGCTT 28907 ||| | ||||| || || | || || |||||||| || | || | | Sbjct 9955 ACGCCTTTTTTCTTATGGGCGATTTTGCCAAGAGCACGGGCGCGTTTAGACCCGCCACGC 9896 Query 28908 GCTACGATAGCCTTTCAGCTTAGTCGATTCATCGGCAACAACGACCGTAAAGGGCCACGC 28967 | | || | | || ||||| |||||||| |||||||| || || ||||||||||| | Sbjct 9895 GTTCGGAACGAC-TTAAGCTTTGTCGATTCGTCGGCAACGACAACGGTAAAGGGCCAATC 9837 Query 28968 ATCGCCGTAATAGTCGACCAGCCACTCAACCACATCGTAGTTAACACAAACCACGTTAGC 29027 || || || | |||| ||| || | | |||||||||| ||| ||||||||| | Sbjct 9836 GTCACCAAGGTATTGCACCAACCATTCTGCGATATCGTAGTTACAACACACCACGTTATC 9777 Query 29028 GTCGCTCTCCAGCGCT-----GCAATACGGTCCTTCTCCGGCCCGGTGCCGTCTACGACC 29082 | | | || || | ||| | | || |||||||||||||| ||||| Sbjct 9776 CTTACCGGCGAGTACTTGTTGCCGATAGGCTACT-----GGCCCGGTGCCGTCGACGACT 9722 Query 29083 AGCAGGGATGAGAACCGCCATTTCTCCTGTTCCGGGGGCCAGGTGCCGGATGCAACGCGC 29142 |||| | | |||| |||||| || || || |||||| || |||| ||||||||| Sbjct 9721 TGCAGTGCGGGAAACCCCCATTTGTCTTGCTCTCCGGGCCACGTCGCGGACGCAACGCGC 9662 Query 29143 AGCGGGGCCAGCACCAGTACGCGGTCCTCCTGGTTTGAC--AGGATGCCAGTCTGGAACA 29200 ||||| || ||||| || ||||| || | ||| | | || ||| ||| ||||| Sbjct 9661 AGCGGCGCGAGCACAAGGACGCGATCTT--TGG---GCCCGAGTTCGCCGCTCTTGAACA 9607 Query 29201 TTTTATTCAGCGCCCACATTGTCGCGCCGGTTTTACCGGATCCCATTGTCGCCCATATAT 29260 | | || |||||||||| ||| ||||||||||| || ||||| || || ||| || Sbjct 9606 TCTGGTTTAGCGCCCACAGTGTGGCGCCGGTTTTGCCACTACCCATCGTGGCGTATAGAT 9547 Query 29261 TGCATCG 29267 |||| || Sbjct 9546 TGCAGCG 9540 Score = 244 bits (270), Expect = 3e-60 Identities = 513/755 (68%), Gaps = 30/755 (4%) Strand=Plus/Minus Query 37833 TGCACCGATGCGGATCTGGATAACGAGCCGGTTGCGCTGTTCAGCAAGCACGACCCGATT 37892 |||||||| || ||| || || || ||| ||| |||||| ||| ||| ||||| Sbjct 1270 TGCACCGACGCCGATTTGATGAATGAACCGTCTGCCTTGTTCACTAAGAACGTGCCGATC 1211 Query 37893 ATCGAGGGGTTGATTAACTTTAAATCAACTTGGTATATGGCTGGCGAGTCGAACATCGGT 37952 || || ||||| | ||||| ||| || ||||| ||| ||||| || ||||| || Sbjct 1210 ATTGATGGGTTTTTAAACTTCCGATCGACGTGGTACGCGGCGGGCGAATCAAACATAGGC 1151 Query 37953 AAGTCTTTCTACGTGCTGGGGCAAATGGGTGCGGTTGCCGCGGGGATTCCGTTCGGTGGC 38012 || || |||| ||| || ||| |||| || || ||||| || || || || | || Sbjct 1150 AAATCGTTCTTCGTCCTTGGGGCTATGGCCGCTGTCGCCGCTGGCATACCTTTTGCGGGG 1091 Query 38013 GCGAAGGTAGTCCAGTCTCATTGCTTCTATTTCGATGCGGAAGGTGGCGAAGCCTCTAAC 38072 |||||| || | ||||||||||||||| ||||||| ||||||||||| ||| || Sbjct 1090 CAGAAGGTTATCAAATCTCATTGCTTCTATCTCGATGCCGAAGGTGGCGAGAGTTCTCAC 1031 Query 38073 CAGCGTAAGGAAGCAT----TGCAGATCAAATATGAGCACGATCTCGACAAGCTGCACAT 38128 ||||||| || | ||||| || ||| | | || ||| | ||||||||| Sbjct 1030 T----TAAGGAAACAGGCGCTCCAGATAAAGTATCAAGATGACCTCAATTGGCTGCACAT 975 Query 38129 TATCGACCTGCAAACTCGC-----GGCTGGGATATCACCAGCAAATCCGGCTTGCGTGAA 38183 ||||||| |||| |||||||| ||| | | || ||||| ||| Sbjct 974 AGTCGACCT-----CTCGGTATTGGGCTGGGACATCTCAACAAAGACCGGCAAGCGCCGG 920 Query 38184 GTTATCAGCTTTATCAACCGCACCGCTAACG-GCGAA---CCGGTTGGCCTGGTGGCATT 38239 || | | || ||| ||||| | || | | ||| || |||||| || | || || Sbjct 919 GTGACCGACTACATC---CGCAC-GATAGCCCGTGAAGATCCTGTTGGCATGATAGCCTT 864 Query 38240 CGACTCCCTCAACCAGACTGTTGCGTTGCGGTCCGCCGATTCTAAACCGTTCGACGAGAA 38299 |||||| || ||||||||| | || || || || |||| | |||||||| ||||| Sbjct 863 CGACTCTCTAAACCAGACTATGGCTTTACGCTCTTCCGACCTTCGGCCGTTCGATGAGAA 804 Query 38300 CAACGCCAGCGATATGGGCGAAGTGGTCAAAGCGCTGAAGGCCATTGCGGAAAATACAGG 38359 | ||| |||||||| |||||||| || ||||| | || | || || Sbjct 803 TAGCGCGGCAGATATGGGGGAAGTGGTACGCGCCCTGAAAGAGATCTCTATCGCAACCGG 744 Query 38360 CGGCAGTGCGGGCGTCATCCACCACCCGGCGAAAGGTGCAAACGGCAGCA-GATCTCCCC 38418 ||| || |||||| | || |||||||| ||||| | || | || | ||| | | Sbjct 743 CGGATCGGCTGGCGTCGTTCATCACCCGGCAAAAGGGGGTGGCG-CGTCACGCTCTGCGC 685 Query 38419 GTGGGTCCGGCGCGCTGCATGGTGCTGTCGATTCCGCGTTCTTCCTGGAACAGCCGGA-C 38477 | || |||||||||||||||||||| || ||||| || || || | || ||||| || | Sbjct 684 GCGGTTCCGGCGCGCTGCATGGTGCAGTGGATTCGGCCTTTTTTATCGAGCAGCCTGATC 625 Query 38478 GACAATCAGCCTGGTCAATTGAACCTGTATCACGAAAAGGCACGTAACGGCATCAAGCAA 38537 | ||||| ||| || | || || ||||||||||| | ||||||||| | |||||| Sbjct 624 CAGAATCAATG-GGTAAAATCAATCTTTATCACGAAAAATCCCGTAACGGCGTGAAGCAA 566 Query 38538 GCGCCGCGCGGCTTCGTCCTGCTCAAGTGCAAAGT 38572 |||| | |||||| | |||| || || ||||| Sbjct 565 TCGCCAAGGGGCTTCCTGCTGCGAAAATGTAAAGT 531 Score = 205 bits (226), Expect = 3e-48 Identities = 499/747 (67%), Gaps = 28/747 (4%) Strand=Plus/Minus Query 31339 GGTCGTCGCTATACTCGCCGCGTGCCAGGTTTTGAGGCTGGAATCCTTTACCGGCCCAGC 31398 |||||||| || | || ||||| || || || || || || ||| || ||||| | Sbjct 7746 GGTCGTCGTGGTAATACCCACGTGCAAGATTCTGCGGTTGAAAGCCTCGCCCAGCCCATC 7687 Query 31399 GTAGCGTGCGCTTTGCGCCACCATACTGAAGACACCCACGGCGGCGACCATCGGCGGATA 31458 ||| || ||||| ||||||||||| |||||||| || ||||| || || |||||||| | Sbjct 7686 TTAGGGTTCGCTTGGCGCCACCATATTGAAGACAACCCCGGCGCCGGCCGTCGGCGGACA 7627 Query 31459 GGCCGTTAACGAGCGGATTGTACTTAGTCGATGCCGTTGATGACGCACCGAGGCGCATTT 31518 | || | | || || ||||| || |||||||||||||| | || ||||||||||||| Sbjct 7626 GACCCTCGATAAGTGGCTTGTATTTTGTCGATGCCGTTGACGCTGCGCCGAGGCGCATTT 7567 Query 31519 C---GATAAGCGCTTTGCCTTCGTCGGGGAAATCCGGGTCTTCAAGCAGGTCGTTAAGTG 31575 | ||||| ||| | ||||||| |||| ||| || ||||| |||||||| | Sbjct 7566 CAATGATAA-CGC--GGGCTTCGTCTGGGAGATCTGGATCTTCTAGCAGGTCCAGCAAGA 7510 Query 31576 TGGATTTCTGCGCGTTGTGGATCGTGAACGCCGGGGCGATATCACGCAGGATTGGCAGGA 31635 | ||||| || || | | ||| ||||||||| | | | |||| ||||||| Sbjct 7509 CCGCCTTCTGGGCATTCGGTACGGTGTGCGCCGGGGCTAGACCGCGCAATGCCGGCAGGA 7450 Query 31636 AGTCATTGCCGGTCAG--CTTACCGCCAAATCGCTCCCAGGCTTCTTCCTTCAATTCTTC 31693 | || ||||| || || | ||| || || || || | || | ||||| Sbjct 7449 AATCCGCACCGGTAAGACCTGA--GCCGTATTTGGCCATAGCCTCGGCTTTAAGTTCTTT 7392 Query 31694 CTTATGCGCCTGCACCGCTTTGATCGCGGCGTTCGCCAGGTCAACGTCCACATAGAAGCC 31753 ||||||| |||| | || | | |||| || || || || || || || || Sbjct 7391 CTTATGCTCCTGTATGGCCTGTACCGCGCAACGAGCAAGCTCGGTATCGACGTAAAACCC 7332 Query 31754 GCGGTCGTTGATCAACTGGTCGA----TATG--TAGGATTTCATCTTCCTTCGGAGTATT 31807 ||||| || || | |||||| | || | || ||||| ||| | ||||| Sbjct 7331 TCGGTCATTAATGATCTGGTCAAGCACTAAGATCCGGTTTTCAATCTCCGT-GGAGT--- 7276 Query 31808 ACCCCAGTCCGGTATGCGCCAGTAGACTTCACGCATTGCGATAATATCCAGCGCGGCATA 31867 ||| || | || || || | |||||||| | | ||||| || || || Sbjct 7275 --TCCATGTTGGCAGTCGGTAGAAGGCCTCACGCATAGAAGTGATATCGCGCCGTGCGTA 7218 Query 31868 GCGCAGAAA---TTTGGCCCATTCTTCCGGGTGAGTCTCGCGAGTGTAGCGGCGTATTTT 31924 | | ||| ||| ||||||||| ||||| |||| |||||||| ||||| || Sbjct 7217 GTCTACAAAGCGTTT---CCATTCTTCGGGGTGCGTCTGCTTTGTGTAGCGCCGTATCTT 7161 Query 31925 GTAGGTCTTAGGGGTAGGCTTACAGAATCGTTTAATCAGCGCCTTGCCTGCCTTATCCTT 31984 ||| ||||||| || || |||||||| || | |||| |||||| || |||||||| || Sbjct 7160 GTAATTCTTAGGCGTGGGTTTACAGAAGCGCTGGATCAACGCCTTACCCGCCTTATCTTT 7101 Query 31985 CGCGTGCTCTGCGTCAACGCCCAGCACCTGGCACTGCATATCGAGGCTACCCGGCAGCGC 32044 ||| |||| || |||| ||||| | ||| | | ||||| |||||||| ||| Sbjct 7100 GGCGAGCTCCACGGGAACGTTTAGCACTTCGCAGAGTTTCTCGAGCGAACCCGGCAACGC 7041 Query 32045 GTGGCGAAAGGCCATAATCATGGTGTC 32071 || || ||||| | ||| ||||| Sbjct 7040 GTATCGGTAGGCCTCGACCATTGTGTC 7014 Score = 129 bits (142), Expect = 2e-25 Identities = 428/655 (65%), Gaps = 33/655 (5%) Strand=Plus/Minus Query 29875 GCACCGCGGCGGGCCATTCGCTCATGTTCACGTACCTGGTGCGGCTTCGGT----TTTCC 29930 || || || || || || |||||||||||| || ||||||||| ||||| | ||| Sbjct 9129 GCCCCACGCCGCGCGATACGCTCATGTTCATCGACTTGGTGCGGCATCGGTAGAATGTCC 9070 Query 29931 TCCGGGGCGCTTCACTTCGACGAAAA---CTATCTTGCCGTTGATGATGATAATCAGATC 29987 |||| ||| |||||||||| || | ||| |||||| || ||||| | | || Sbjct 9069 TCCGTGGCT-TTCACTTCGATAAATAACACTACGTTGCCGGGGAGAATGATGAGTAAGTC 9011 Query 29988 GGGCGCACCCGAGCGCCCCTCCCATGCCACTTTGCGGCAGAATCCGCCGACGGCTTTCAC 30047 || || |||| ||||||||| || || ||||| | ||||||| ||| || | Sbjct 9010 CGGGGCGCCCGTGCGCCCCTCATATTTCAGCTTGCGAACAAGGCCGCCGATGGCCTTGAA 8951 Query 30048 CCGTCTCATCAAGTGACTTTGAATCTTGCCTTCTGGTGTCATTATTTCCTGTACCTGTAC 30107 | || ||| || || | || ||||| ||||||||| | | |||||| | Sbjct 8950 CTTTCGCATAGCGTAGGCCTGCACTTTACCTTCAGGTGTCATT---TGCGGTACCTCTT- 8895 Query 30108 ATAATGTC--GCCTTCCGCTGCAAGCGGGAAGCCTTTCGCCCAAACCGGCAGGTCGCACA 30165 | | | ||| || |||| | ||| | || ||||| | || | ||||||| Sbjct 8894 -TCCTTCCCAGCCCTCGGCTGTGATTGGGCATGATTCAGCCCAGTCAGGTAAATCGCACA 8836 Query 30166 TCAGCGCGCACA-ACTCCTCGGTTGTGTAGTCGTCGG--TATCCGGCACTTCGGTTATCA 30222 | ||| | |||| || | || | | | | || |||| || || || |||| | Sbjct 8835 TAAGCTCACACAGACGCTTCACC---GAATACTTAGGCTTATCGGGAACCTCAGTTAAGA 8779 Query 30223 GTTCATCGTGTACGGACAGTACGATCTCATATCCCGCAGCTTCAACGCCAGGCATGGACC 30282 |||||||| ||| || | |||| ||| || || || || ||| | |||| |||| Sbjct 8778 TCTCATCGTGAACGCTGAGAATTATCTTATAACCAGCCGCCTCGACGTTAAGCATCGACC 8719 Query 30283 ATGCGAGGATATCGCGACACAGCGCCTGCACGATGTTTTCCGTGAGTTTGCCGCCGTAGG 30342 | || | ||||||||||| | ||||||| || |||||||| | || || || || | Sbjct 8718 AAGCCAACATATCGCGACATATCGCCTGCGTGACGTTTTCCGCCAACTTACCACCATACG 8659 Query 30343 TGTACTGGAATCCCCACTGGCGCGTCGTCTGATTCTCACCCTGATATTTAATGCGGGTGC 30402 || || | ||||||| | ||| ||||| ||||| || ||||| ||| | | Sbjct 8658 AATATTGCTTTTCCCACTGTCTCGTAGTCTGGTTCTCGCCGAGATAT------CGGATCC 8605 Query 30403 TGGTGCGCTTCTTGCCG---GTGTCTTCGTCGATCTCGGTCGTGACAGACAGCGCGATGC 30459 | ||||| ||| || | |||||| | || || || || || | ||| | Sbjct 8604 TCGTGCGGGGTTTGGCGTCCGGGTCTTC-CGGGTCACGCTC--AACGGAGATACCGACAC 8548 Query 30460 CGGGGTAGCTCATGATGCGCCCCGACGGTAACTCAATTTTCAACCACCACCCCGC 30514 ||||||| |||| || || || ||||| ||||| || || | |||||| || || Sbjct 8547 CGGGGTAACTCAGGAACCGACCAGACGGCAACTCGATCTTAAGCCACCAGCCAGC 8493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141506761666088