Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_024794.1 Length=167318 Score E Sequences producing significant alignments: (Bits) Value seq2788 163 3e-35 seq14905 150 2e-31 seq2551 93.3 5e-14 >seq2788 Length=136445 Score = 163 bits (180), Expect = 3e-35 Identities = 305/441 (69%), Gaps = 8/441 (2%) Strand=Plus/Plus Query 141891 TTAATCTGAATTCCGTAGTCCATATGTCGAATACGGTTTTCATCCACACCTTTGTTATTT 141950 || ||||| | ||||||||||| || |||| ||||| | || ||||| ||| ||| Sbjct 19274 TTGATCTGCACGCCGTAGTCCATGTGACGAACGCGGTTGCCTTCAACACCACGGTTGTTT 19333 Query 141951 TTCAGAACTAATAGGTTCTCTACTTCTAAGTGCCACATCGGATAATACGCTGTAGCAGCA 142010 |||||||| | ||| | || ||||| | |||||||||||| || || || |||||| Sbjct 19334 TTCAGAACCAGCAGGCTTTCAACTTCCAGGTGCCACATCGGGTAGAACAGGGTCGCAGCA 19393 Query 142011 CCGCCGCGAATACCACCTTGAGAACAAGATTTTACTGCAGTTTGGAAATGTTTCCAGAAT 142070 |||||||| | || || ||||| || ||||| || || || ||||| || || |||| Sbjct 19394 CCGCCGCGCACGCCGCCCTGAGAGCAGGATTTAACCGCCGTCTGGAAGTGCTTATAGAAC 19453 Query 142071 GGAATAACACCTGTATGTCGAA--CTTCACCCATACCGATCTTAGAACCTTCTGCACGAA 142128 || ||| || ||||| ||| ||||||| | ||| ||| ||||| | Sbjct 19454 GGGATACAGCCGGTATG--GAATGCTTCACCGCCGCGAATCGGGCTACCCAGCGCACGGA 19511 Query 142129 GCATGCCAACGTTGATACCGATACCAGCTCGTTTAGAAATATATTCGATAATTGATGCT- 142187 |||| ||||||| |||||||| || || | |||| |||| | | || ||| Sbjct 19512 TGCGGCCAGCGTTGATGCCGATACCTGCGCGCTGTGAAACGTATTTCACGA-TGGCGCTG 19570 Query 142188 GAAGTTTTGTTAATAGATTTTAACGAATCACCGGCTTCAATAACTACACAACTAGAGAAC 142247 || || ||| || || | | || ||| || || | ||| ||| |||| Sbjct 19571 GAGGTCGCGTTGATGGAGTCCAGGCTGTCGCCGCACTCGATCAGTACGCAAGAGCTGAAC 19630 Query 142248 TGGCGAGTCGGAGTACGAGCACCTGCCATAATTGGAGTAGGCAATGAAA-CTTGATGAGT 142306 ||||||||||| || || | || | ||||||||| ||||||| |||| ||||| | || Sbjct 19631 TGGCGAGTCGGGGTGCGCACGCCGGACATAATTGGCGTAGGCAGAGAAATCTTGAAG-GT 19689 Query 142307 AGAAACGGCATCATAAAAACG 142327 ||||| |||||||| ||||| Sbjct 19690 TGAAACCGCATCATAGAAACG 19710 >seq14905 Length=119551 Score = 150 bits (166), Expect = 2e-31 Identities = 143/183 (78%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 61278 TTATAGACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGTTGTTCCGGAGTCAGAGA 61337 ||| || |||| ||| || ||||||| ||| ||||| |||| |||||||| |||| || Sbjct 42459 TTACAGGCTCTGAGTGAAAGTACGAGTGATCACGTCCTGCTGCTGTTCCGGCGTCAACGA 42400 Query 61338 GTTAAAGCGAACTGCATATCCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 61397 |||||| || || || || || || |||||||| |||| ||| ||||| || || ||||| Sbjct 42399 GTTAAAACGCACGGCGTACCCCGAGACACGGATAGTCAACTGAGGATACTTCTCAGGATG 42340 Query 61398 CTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACC 61457 || | |||||||| || || |||||||||| ||||||||||| || || || || || Sbjct 42339 TTTTATCGCATCTTCGAGCGTCTCACGACGCATGACGTTAACGTTAAGATGCTGCCCCCC 42280 Query 61458 TTC 61460 ||| Sbjct 42279 TTC 42277 >seq2551 Length=53185 Score = 93.3 bits (102), Expect = 5e-14 Identities = 125/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 61290 AGTAAAGGTACGAGCGATAACGTCGCGCTGTTGTTCCGGAGTCAGAGAGTTAAAGCGAAC 61349 |||||||||||| | || ||||| |||| ||||| || || ||||| ||||| || Sbjct 37104 AGTAAAGGTACGGGTAATCACGTCCTGCTGCTGTTCTTTGGTTAGTGAGTTGAAGCGTAC 37045 Query 61350 TGCATATCCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATC 61409 ||||| || || || ||||| |||||||| || |||| || |||| | | || || Sbjct 37044 CGCATAGCCTGAAACGCGGATAGTCAGCTGAGGGAATTTCTCAGGATTTTCCATGGCCTC 36985 Query 61410 TTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAAT 61463 ||| | || || || |||||||||||||| || ||||| ||||| || Sbjct 36984 CAGCAGCATCTCGCGGTTCATTACGTTAACGTTCAGATGCTGACCGCCTTCGAT 36931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534359226528480