Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq119770 109 4e-19 seq123102 105 4e-18 seq21876 93.3 3e-14 seq138766 84.2 1e-11 >seq119770 Length=1537 Score = 109 bits (120), Expect = 4e-19 Identities = 171/242 (71%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| || |||| || || || |||||||| || ||||| ||||| Sbjct 865 ACCACCACGTAGACGCAATACCAGGTGAAGTGTTGATTCTTTTTGAATATTGTAGTCGGA 924 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || ||| | || || |||||||||||||| ||||| | ||| || |||||| | || Sbjct 925 TAGAGTACGTCCATCTTCTAATTGTTTTCCGGCGAAAATAAGACGTTGTTGATCTGGTGG 984 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||| || ||| || | || |||| || | |||||| || |||| Sbjct 985 AATACCTTCTTTATCCTGAATCTT-AGCTTTGACATTTTCAATGGTGTCAGATGGCTCCA 1043 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGGTGTGT 33760 | || | ||||| || || || |||| ||||| || || || ||||| | | ||| | Sbjct 1044 CCTCTAAGGTGATGGTCTTGCCAGTTAGTGTTTTGACGAAAATTTGCATTTTGGTTGTCT 1103 Query 33761 TT 33762 || Sbjct 1104 TT 1105 >seq123102 Length=1410 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | ||||| || || || || ||||| |||||||||||||| Sbjct 589 ACCACCCCGCAGACGCAGAACCAAGTGAAGTGTTGATTCCTTTTGAATGTTGTAATCGGA 648 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||||||| | || || | || || ||||| ||||| ||||| || || ||| | || Sbjct 649 TAATGTGCGTCCATCCTCAAGCTGCTTGCCGGCGAAAATTAAACGTTGTTGGTCTGGGGG 708 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| || || |||||| || || ||| | || | ||| || | ||| | Sbjct 709 AATGCCTTCCTTATCTTGAATTTT-TGCTTTAACGTTCTCGATGGTATCCGAAGGTTCAA 767 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| ||||| || || || ||||| ||||| || |||||| Sbjct 768 CTTCCAATGTGATAGTTTTGCCAGTCAATGTTTTAACAAATATTTGCATA 817 >seq21876 Length=2391 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | |||||||| || || || || || |||||||||||||| Sbjct 739 ACCACCACGTAGACGCAGGACCAAATGAAGCGTTGATTCCTTCTGAATGTTGTAATCGGA 680 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || | || |||||||| || ||||| || || ||||||||||||||| | || Sbjct 679 CAAGGTACGGCCATCTTCCAATTGCTTGCCGGCGAAGATTAAACGCTGCTGATCTGGGGG 620 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| || || | | ||| | || | |||||| | || | Sbjct 619 AATTCCCTCCTTGTCCTGGATCTT-AGCCTTAACGTTTTCGATGGTGTCAGACGGCTCAA 561 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || || || |||||||| ||||| |||||| Sbjct 560 CTTCCAGGGTGATAGTCTTGCCAGTCAAAGTTTTTACGAAGATTTGCATA 511 >seq138766 Length=1258 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 |||||| ||||| ||||||||||| ||||| | | | || || | || || || ||||| Sbjct 831 CTCTTTCTGTATATTGTAATCGGAAAGTGTTCTTCCATCCTCAAGCTGCTTACCAGCAAA 772 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 |||| | |||||||||| | || | || ||||| || ||||| | | |||| Sbjct 771 GATCAGTCTCTGCTGATCTGGTGGAATCCCCTCTTTATCCTGTATTTT-GGCCTTGACAT 713 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 || || | ||| || ||||| || | || || ||||| || |||| ||||||| Sbjct 712 TCTCAACATTTTCGGATGGCTCCACCTCCAGTGTTATTGTTTTTCCCGTTAGTGTTTTTA 653 Query 33737 CAAAGATCTGCAT 33749 | ||||| ||||| Sbjct 652 CGAAGATTTGCAT 640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328146970600320