Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq123102 118 3e-21 seq119770 111 4e-19 seq138766 96.9 8e-15 seq21876 96.9 8e-15 >seq123102 Length=1410 Score = 118 bits (130), Expect = 3e-21 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || |||||| ||||| | || || ||||| ||||| |||||||| ||| ||| || Sbjct 813 CAAATATTTGTTAAAACATTGACTGGCAAAACTATCACATTGGAAGTTGAACCTTCGGAT 754 Query 206233 ACAGTCGA-ATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || |||| | | |||||||||| |||||||| || ||||| ||| || ||| || Sbjct 753 ACCATCGAGAACGTTAAAGCAAAA-ATTCAAGATAAGGAAGGCATTCCCCCAGACCAACA 695 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | | || |||||||| |||||| | || |||||| | || || ||||||||||| | Sbjct 694 ACGTTTAATTTTCGCCGGCAAGCAGCTTGAGGATGGACGCACATTATCCGATTACAACAT 635 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || || || || |||||| | ||| || | || || Sbjct 634 TCAAAAGGAATCAACACTTCACTTGGTTCTGCGTCTGCG 596 Score = 95.1 bits (104), Expect = 3e-14 Identities = 127/174 (73%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT-AAAGCA 206252 || |||||||| ||||||||||| || || |||||| || | ||| || ||||| Sbjct 1020 ACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCTGATACCATTGAAAATGTTAAAGCT 961 Query 206253 AAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAA 206312 ||| |||||||| ||||||||||| || || ||| | | || ||||| || || Sbjct 960 AAA-ATTCAAGATAAAGAAGGAATCCCACCAGATCAACAACGTTTGATTTTCGCTGGCAA 902 Query 206313 GCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTAC 206366 ||||| || |||||| | || ||| ||||||| || | ||||| || ||||| Sbjct 901 ACAGTTAGAGGATGGACGCACATTGTCCGATTATAATATTCAGAAGGAATCTAC 848 >seq119770 Length=1537 Score = 111 bits (122), Expect = 4e-19 Identities = 151/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| || || || || || ||||| || || ||||| |||||||| | ||| Sbjct 1078 CAAAACACTAACTGGCAAGACCATCACCTTAGAGGTGGAGCCATCTGACACCATTGAAAA 1019 Query 206244 AGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 || ||||| || |||||| || |||||||| ||| || || ||| | ||||| | Sbjct 1018 TGTCAAAGCTAA-GATTCAGGATAAAGAAGGTATTCCACCAGATCAACAACGTCTTATTT 960 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 |||||||||| || || ||||||||| | ||| | |||| ||||| | || ||||| | Sbjct 959 TCGCCGGAAAACAATTAGAAGATGGACGTACTCTATCCGACTACAATATTCAAAAAGAAT 900 Query 206363 CTACTCTTCACCTTGTTTTGAGACTTCG 206390 | || |||||||| || ||| | || || Sbjct 899 CAACACTTCACCTGGTATTGCGTCTACG 872 >seq138766 Length=1258 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || |||||||| || || |||| ||||| || || | || || Sbjct 655 AAAACACTAACGGGAAAAACAATAACACTGGAGGTGGAGCCATCCGAAAATGTTGAGAAT 714 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || || || || ||||| || ||| || || || ||||| ||||| Sbjct 715 GTCAAGGCCAAAATACAGGATAAAGAGGGGATTCCACCAGATCAGCAGAGACTGATCTTT 774 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| | || |||||||| || | |||||||||| | |||||||||||| Sbjct 775 GCTGGTAAGCAGCTTGAGGATGGAAGAACACTTTCCGATTACAATATACAGAAAGAGTCT 834 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || | || |||||| |||| ||||| Sbjct 835 ACAATCCATCTTGTTCTGAGGCTTCG 860 >seq21876 Length=2391 Score = 96.9 bits (106), Expect = 8e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || || || ||||| ||||||| || |||||||| ||||| Sbjct 527 AAAACTTTGACTGGCAAGACTATCACCCTGGAAGTTGAGCCGTCTGACACCATCGAAAAC 586 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || |||||| || || || | | |||||| Sbjct 587 GTTAAGGCTAAGATCCAGGACAAGGAGGGAATTCCCCCAGATCAGCAGCGTTTAATCTTC 646 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| ||||| ||||||||||| | || ||| ||||||||||| | ||||| || || Sbjct 647 GCCGGCAAGCAATTGGAAGATGGCCGTACCTTGTCCGATTACAACATTCAGAAGGAATCA 706 Query 206365 ACTCTTCA 206372 || ||||| Sbjct 707 ACGCTTCA 714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179715354483366