Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_025414.1 Length=178171 Score E Sequences producing significant alignments: (Bits) Value seq2788 275 7e-69 seq14905 116 4e-21 seq38357 102 9e-17 seq2551 96.9 4e-15 >seq2788 Length=136445 Score = 275 bits (304), Expect = 7e-69 Identities = 375/518 (72%), Gaps = 18/518 (3%) Strand=Plus/Minus Query 41180 CCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTCCAGTTGCGTAGTG 41239 |||||||| |||||| | || ||||| || || || || ||||| | ||||||| || Sbjct 19671 CCTACGCCAATTATGTCCGGCGTGCGCACCCCGACTCGCCAGTTCAGCTCTTGCGTACTG 19612 Query 41240 ATTGAATCAGGTGATTCCCTGGGTTCTCTGAATGCTGTAACCTCT---GCGATCGTGAAG 41296 || || | || || ||||| || | || || ||||| || |||||||| Sbjct 19611 ATCGAGTGCGGCGACAGCCTGGACTCCATCAACGCG---ACCTCCAGCGCCATCGTGAAA 19555 Query 41297 TATATTTCACAACGTGCTGGTATCGGTGTTAATGCTGGACACATTCGCGCAATGGGTTCT 41356 || ||||||| || || |||||||| | || ||||| | ||| || || ||||| Sbjct 19554 TACGTTTCACAGCGCGCAGGTATCGGCATCAACGCTGGCCGCATCCGTGCGCTGGGTAGC 19495 Query 41357 AAAATCCGTGGTGGTGAAGCAGTACATACAGGCGTGATCCCGTTCTGGAAACATATTCAG 41416 || || || ||||||||| | ||||| ||| |||||||||| || || | ||| Sbjct 19494 CCGATTCGCGGCGGTGAAGCATTCCATACCGGCTGTATCCCGTTCTATAAGCACTTCCAG 19435 Query 41417 ACAGCGGTTAAATCCTGTTCACAAGGTGGCGTTCGTGGTGGTGCTGCAACGTTGTATTAT 41476 || |||||||||||||| || || || ||||| || || |||||||| || ||| || Sbjct 19434 ACGGCGGTTAAATCCTGCTCTCAGGGCGGCGTGCGCGGCGGTGCTGCGACCCTGTTCTAC 19375 Query 41477 CCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAACAAAGGTGTTGAG 41536 ||||| ||||| |||||||||||| |||||||||||||||||||||| |||||||| Sbjct 19374 CCGATGTGGCACCTGGAAGTTGAAAGCCTGCTGGTTCTGAAAAACAACCGTGGTGTTGAA 19315 Query 41537 AATAACCGCATTCGTCACCTGGATTATGGCGTTCAGCTTAACGATTTGATGTATAAGCGT 41596 |||||| |||||||| |||| || ||||| ||| | ||| | |||||||| ||||| Sbjct 19314 GGCAACCGCGTTCGTCACATGGACTACGGCGTGCAGATCAACAAACTGATGTATCAGCGT 19255 Query 41597 TTAATCAATAACGATTACATCACACTGTTCAGCC---CTGACGTTGCAAATGATCGCCTG 41653 | | || || ||||||| |||||||||| |||||| ||| | ||||| Sbjct 19254 CTGGTTAAAGGCGGCGACATCACTCTGTTCAGCCCGTCTGACG-TGC-----CTGGCCTG 19201 Query 41654 TATGATGCTTTCTATCAAGCTGATCAGACTGAGTTCGA 41691 || || || |||| || || |||||| |||||||| Sbjct 19200 TACGACGCGTTCT-TC--GCCGATCAGGACGAGTTCGA 19166 >seq14905 Length=119551 Score = 116 bits (128), Expect = 4e-21 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 50997 GAGTTTCAACCGACTGTTAAAGTTGAAGGTGGACAGCACCTAAACGTGAATGTGCTACGT 51056 ||| |||| || || ||| || ||||| || ||||| || ||||| || || | ||| Sbjct 42253 GAGATTCAGCCAACGGTTCGCGTAGAAGGGGGGCAGCATCTTAACGTTAACGTCATGCGT 42312 Query 51057 CGCGAAACCCTGAAAGATGCTGTGAAACATCCTGAGAAGTACCCACAGTTAACGATCCGC 51116 || || || || ||||||| | ||||||||||||||||| || ||||| || ||||| Sbjct 42313 CGTGAGACGCTCGAAGATGCGATAAAACATCCTGAGAAGTATCCTCAGTTGACTATCCGT 42372 Query 51117 GTTTCAGGTTATGCAGTTCGCTTTAATGCACTGACTCCAGAACAACAGCGCGACGTTATC 51176 || || || || || || || ||||| | |||| || ||||| |||| ||||| ||| Sbjct 42373 GTCTCGGGGTACGCCGTGCGTTTTAACTCGTTGACGCCGGAACAGCAGCAGGACGTGATC 42432 Query 51177 GCCAGAACCTTTACGGAAAGCATGTAA 51203 | | || || || | ||| ||||| Sbjct 42433 ACTCGTACTTTCACTCAGAGCCTGTAA 42459 >seq38357 Length=36386 Score = 102 bits (112), Expect = 9e-17 Identities = 210/307 (68%), Gaps = 4/307 (1%) Strand=Plus/Plus Query 154260 AACGAGAACGCGAACAAAGAC-GCAAGGGTTTTCCCGACACAGCGCGATCTGTTGGCGGG 154318 || || ||||| || || ||| |||| | ||||| ||||||||||| ||| ||||||| Sbjct 27082 AATGAAAACGCCAATAAGGACAGCAAAGTCATTCCC-ACACAGCGCGACCTGCTGGCGGG 27140 Query 154319 TATCGTAGCGAAACACTTCGCACGTAACCACATTCTACCAAAACACATCGTAGAAGCGCA 154378 || ||||||||||||| || ||| | || ||||| || || | || || || Sbjct 27141 GATTGTAGCGAAACACTATGCGCGTCAGCATATTCTGCCTCGTGACGTGGTGCTGGCCCA 27200 Query 154379 TGATTCTGGTGATATCCATTATCATGATCTGGATTACAGCCCG-TTCACGCCATACACAA 154437 || || || || |||||||| ||||| || ||| ||| || | | || | | Sbjct 27201 CGAGCGCGGCGAAATTCATTATCACGATCTCGACTACTCACCGTTTTTCCCGATGTTC-A 27259 Query 154438 ACTGCTGTCTGGTGGATTTGAAAGGTATGCTGGCTAATGGCTTCAAGATGGGTAACGCAG 154497 ||||| || | || | ||||| ||| || ||| || || || ||||| ||||| | Sbjct 27260 ACTGCATGCTCATCGACCTCAAAGGCATGTTGAATAAAGGTTTTAAAATGGGCAACGCGG 27319 Query 154498 ACATCGAACCCCCGAAATCAATCGGTGTTGCGACTGCTCTTATGGCACAGATCACCGCAC 154557 | ||||| | ||||| || ||| ||||| || | | ||||||||| | ||| | Sbjct 27320 AAATCGATACGCCGAAGTCCATCTCCACCGCGACCGCCGTCACGGCACAGATTATCGCTC 27379 Query 154558 AGATTGC 154564 || |||| Sbjct 27380 AGGTTGC 27386 >seq2551 Length=53185 Score = 96.9 bits (106), Expect = 4e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 51021 GAAGGTGGACAGCACCTAAACGTGAATGTGCTACGTCGCGAAACCCTGAAAGATGCTGTG 51080 ||||| || ||||| || ||||| || || | ||||| | ||| || || || Sbjct 36934 GAAGGCGGTCAGCATCTGAACGTTAACGTAATGAACCGCGAGATGCTGCTGGAGGCCATG 36993 Query 51081 AAACATCCTGAGAAGTACCCACAGTTAACGATCCGCGTTTCAGGTTATGCAGTTCGCTTT 51140 || |||||||||| | ||| ||| | || |||||||||||||| ||||| || ||||| Sbjct 36994 GAAAATCCTGAGAAATTCCCTCAGCTGACTATCCGCGTTTCAGGCTATGCGGTACGCTTC 37053 Query 51141 AATGCACTGACTCCAGAACAACAGCGCGACGTTATCGCCAGAACCTTTACGGAAAGCATG 51200 || |||| || |||||| |||| ||||| || || | |||||||| ||| || Sbjct 37054 AACTCACTAACCAAAGAACAGCAGCAGGACGTGATTACCCGTACCTTTACTAAAACGCTG 37113 Query 51201 TAA 51203 ||| Sbjct 37114 TAA 37116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569028463878960