Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_025425.1 Length=163424 Score E Sequences producing significant alignments: (Bits) Value seq2788 183 3e-41 seq2551 122 9e-23 seq14905 82.4 8e-11 >seq2788 Length=136445 Score = 183 bits (202), Expect = 3e-41 Identities = 342/494 (69%), Gaps = 10/494 (2%) Strand=Plus/Plus Query 135307 GGACTAAACAGAGTAATGTAATCCCGTTTAAGGAATCGCTCTACCATCAGGTTATTAATC 135366 || || |||||||| |||| | | ||||| | |||| |||||| || || ||| Sbjct 19220 GGGCTGAACAGAGTGATGTCGCCGCCTTTAACCAGACGCTGATACATCAGTTTGTTGATC 19279 Query 135367 TGTACGCCGTAGTCAAGATGGCGAATGCGGTTATCTTCCACGCCCTTATTGTTCTTTAAC 135426 || ||||||||||| | || |||| |||||| |||| || || ||||| || | Sbjct 19280 TGCACGCCGTAGTCCATGTGACGAACGCGGTTGCCTTCAACACCACGGTTGTTTTTCAGA 19339 Query 135427 ACAATCAGACTTTCAAACTCTAAATGCCACATTGGGTAATAGAGAGTCGCCGCCCCGCCA 135486 || | ||| ||||||| || | |||||||| ||||| | || ||||| || ||||| Sbjct 19340 ACCAGCAGGCTTTCAACTTCCAGGTGCCACATCGGGTAGAACAGGGTCGCAGCACCGCCG 19399 Query 135487 CGAATACCGCCTTGTGAGCATGACTTAACGGCAGTCTGAAAATGTTTCCAGAATGGGATA 135546 || | ||||| || ||||| || ||||| || ||||| || || || |||| |||||| Sbjct 19400 CGCACGCCGCCCTGAGAGCAGGATTTAACCGCCGTCTGGAAGTGCTTATAGAACGGGATA 19459 Query 135547 ACGCCAGTATGACGAA--CTTCACCATGCC-CG-ATCTTAGATCCTTCCGCGCGAATCAT 135602 ||| ||||| ||| ||||||| ||| || ||| || ||| || || Sbjct 19460 CAGCCGGTATG--GAATGCTTCACC--GCCGCGAATCGGGCTACCCAGCGCACGGATGCG 19515 Query 135603 GCCAGCGTTGATACCGATACCCGCACGCTTGCTAATATACTTGATGATTGCATTTGCTGT 135662 |||||||||||| |||||||| || |||| || || || | ||| || | | || Sbjct 19516 GCCAGCGTTGATGCCGATACCTGCGCGCTGTGAAACGTATTTCACGATGGCGCTGGAGGT 19575 Query 135663 TTCGTTGATGCCCTGCAATGAGTCATCACTTTCAATCACCACACACGAACTAAATTGGCG 135722 |||||||| | || ||| | | || |||| || || || || || ||||| Sbjct 19576 CGCGTTGATGGAGTCCAGGCTGTCGCCGCACTCGATCAGTACGCAAGAGCTGAACTGGCG 19635 Query 135723 TGTTGGGGTACGCACACCAGCCATAATCGGAGTAGGCAGAGAGAT-TTGCTTATTCGAAA 135781 || ||||| ||||| || | |||||| || ||||||||||| || ||| || |||| Sbjct 19636 AGTCGGGGTGCGCACGCCGGACATAATTGGCGTAGGCAGAGAAATCTTGAAGGTT-GAAA 19694 Query 135782 CAGCATTATAAAAA 135795 | |||| ||| ||| Sbjct 19695 CCGCATCATAGAAA 19708 >seq2551 Length=53185 Score = 122 bits (134), Expect = 9e-23 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 53981 TTAGAGAGATTCGGTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAGACT 54040 ||| || | || ||||||||||| | || ||||| ||||||| ||| || || Sbjct 37116 TTACAGCGTTTTAGTAAAGGTACGGGTAATCACGTCCTGCTGCTGTTCTTTGGTTAGTGA 37057 Query 54041 ATTGAAGCGCACTGCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGGATG 54100 |||||||| || || || || |||||||| || || ||||| ||| | |||||||||| Sbjct 37056 GTTGAAGCGTACCGCATAGCCTGAAACGCGGATAGTCAGCTGAGGGAATTTCTCAGGATT 36997 Query 54101 TTCAACAGCGTCCAGCAACATTTCTCGTAACAATACGTTAACATTCAAATGCTGGCCACC 54160 ||| | || ||||||| ||| || || || ||||||||| |||| |||||| || || Sbjct 36996 TTCCATGGCCTCCAGCAGCATCTCGCGGTTCATTACGTTAACGTTCAGATGCTGACCGCC 36937 Query 54161 TTCGA 54165 ||||| Sbjct 36936 TTCGA 36932 >seq14905 Length=119551 Score = 82.4 bits (90), Expect = 8e-11 Identities = 124/174 (71%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 53994 GTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAGACTA-TTGAAGCGCAC 54052 || || ||||| | ||| ||||| ||||||| || || |||| || | || || ||||| Sbjct 42446 GTGAAAGTACGAGTGATCACGTCCTGCTGCTGTTCCGGCGTCA-ACGAGTTAAAACGCAC 42388 Query 54053 TGCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGGATGTTCAACAGCGTC 54112 ||||| || || || || || || | ||| || |||||||||||||||| | || || Sbjct 42387 GGCGTACCCCGAGACACGGATAGTCAACTGAGGATACTTCTCAGGATGTTTTATCGCATC 42328 Query 54113 CAGCAACATTTCTCGTAACAATACGTTAACATTCAAATGCTGGCCACCTTCGAC 54166 | | | || || || |||||||| || | |||||| || ||||| || Sbjct 42327 TTCGAGCGTCTCACGACGCATGACGTTAACGTTAAGATGCTGCCCCCCTTCTAC 42274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521920084333440