Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_025437.1 Length=169062 Score E Sequences producing significant alignments: (Bits) Value seq14905 159 4e-34 seq2788 145 8e-30 seq2551 93.3 5e-14 >seq14905 Length=119551 Score = 159 bits (176), Expect = 4e-34 Identities = 145/183 (79%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 62329 TTATAGACTCTCAGTAAAGGTACGAGCGATAACGTCACGCTGCTGTTCCGGAGTCAGAGA 62388 ||| || |||| ||| || ||||||| ||| ||||| ||||||||||||| |||| || Sbjct 42459 TTACAGGCTCTGAGTGAAAGTACGAGTGATCACGTCCTGCTGCTGTTCCGGCGTCAACGA 42400 Query 62389 GTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAACTGCGGATATTTTTCTGGATG 62448 |||||| || || || || || || |||||||| |||||||| ||||| || || ||||| Sbjct 42399 GTTAAAACGCACGGCGTACCCCGAGACACGGATAGTCAACTGAGGATACTTCTCAGGATG 42340 Query 62449 CTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACC 62508 || | |||||||| || || |||||||||| ||||||||||| || || || || || Sbjct 42339 TTTTATCGCATCTTCGAGCGTCTCACGACGCATGACGTTAACGTTAAGATGCTGCCCCCC 42280 Query 62509 TTC 62511 ||| Sbjct 42279 TTC 42277 >seq2788 Length=136445 Score = 145 bits (160), Expect = 8e-30 Identities = 301/441 (68%), Gaps = 8/441 (2%) Strand=Plus/Plus Query 142370 TTAATCTGAATTCCGTAGTCCATATGTCTAATACGGTTTTCATCCACGCCTTTGTTATTT 142429 || ||||| | ||||||||||| || | || ||||| | || || || ||| ||| Sbjct 19274 TTGATCTGCACGCCGTAGTCCATGTGACGAACGCGGTTGCCTTCAACACCACGGTTGTTT 19333 Query 142430 TTCAGAACCAACAGGTTCTCTACTTCTAAGTGCCACATCGGATAATACGCTGTAGCAGCA 142489 |||||||||| |||| | || ||||| | |||||||||||| || || || |||||| Sbjct 19334 TTCAGAACCAGCAGGCTTTCAACTTCCAGGTGCCACATCGGGTAGAACAGGGTCGCAGCA 19393 Query 142490 CCACCACGAATACCACCTTGAGAACAAGATTTTACTGCAGTTTGGAAATGTTTCCAGAAT 142549 || || || | || || ||||| || ||||| || || || ||||| || || |||| Sbjct 19394 CCGCCGCGCACGCCGCCCTGAGAGCAGGATTTAACCGCCGTCTGGAAGTGCTTATAGAAC 19453 Query 142550 GGAATAACACCCGTATGTCGAA--CTTCACCCATACCAATCTTAGAACCTTCTGCACGAA 142607 || ||| || ||||| ||| ||||||| | |||| ||| ||||| | Sbjct 19454 GGGATACAGCCGGTATG--GAATGCTTCACCGCCGCGAATCGGGCTACCCAGCGCACGGA 19511 Query 142608 GCATACCAACGTTGATACCGATACCAGCTCGTTTAGAAATATATTCAATAATTGATGCT- 142666 ||| ||||||| |||||||| || || | |||| |||| | | || ||| Sbjct 19512 TGCGGCCAGCGTTGATGCCGATACCTGCGCGCTGTGAAACGTATTTCACGA-TGGCGCTG 19570 Query 142667 GAAGTTTTGTTAATAGATTTTAACGAATCACCGGCTTCAATAACTACACAACTAGAGAAC 142726 || || ||| || || | | || ||| || || | ||| ||| |||| Sbjct 19571 GAGGTCGCGTTGATGGAGTCCAGGCTGTCGCCGCACTCGATCAGTACGCAAGAGCTGAAC 19630 Query 142727 TGGCGAGTTGGAGTACGAGCACCTGCCATAATTGGGGTTGGCAATGAAA-CTTGATGAGT 142785 |||||||| || || || | || | ||||||||| || |||| |||| ||||| | || Sbjct 19631 TGGCGAGTCGGGGTGCGCACGCCGGACATAATTGGCGTAGGCAGAGAAATCTTGAAG-GT 19689 Query 142786 AGAAACGGCATCATAAAAACG 142806 ||||| |||||||| ||||| Sbjct 19690 TGAAACCGCATCATAGAAACG 19710 >seq2551 Length=53185 Score = 93.3 bits (102), Expect = 5e-14 Identities = 125/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 62341 AGTAAAGGTACGAGCGATAACGTCACGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAAC 62400 |||||||||||| | || ||||| |||||||||| || || ||||| ||||| || Sbjct 37104 AGTAAAGGTACGGGTAATCACGTCCTGCTGCTGTTCTTTGGTTAGTGAGTTGAAGCGTAC 37045 Query 62401 TGCATAACCGGATACACGGATGGTCAACTGCGGATATTTTTCTGGATGCTTAACTGCATC 62460 ||||| || || || ||||| |||| ||| || |||| || |||| | | || || Sbjct 37044 CGCATAGCCTGAAACGCGGATAGTCAGCTGAGGGAATTTCTCAGGATTTTCCATGGCCTC 36985 Query 62461 TTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAAT 62514 ||| | || || || |||||||||||||| || ||||| ||||| || Sbjct 36984 CAGCAGCATCTCGCGGTTCATTACGTTAACGTTCAGATGCTGACCGCCTTCGAT 36931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539930326679520