Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq119770 109 5e-19 seq88566 104 2e-17 seq123102 102 8e-17 seq21876 100 3e-16 seq43985 84.2 2e-11 >seq119770 Length=1537 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||| || | |||| ||||||||||| ||||||||| | ||||| | Sbjct 878 CGCAATACCAGGTGAAGTGTTGATTCTTTTTGAATATTGTAGTCGGATAGAGTACGTCCA 937 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | ||||| |||| | || ||||| ||||||||||| || || ||||||||| Sbjct 938 TCTTCTAATTGTTTTCCGGCGAAAATAAGACGTTGTTGATCTGGTGGAATACCTTCTTTA 997 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| || ||| | | ||| | || || | |||||||| || | || | Sbjct 998 TCCTGAATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGCTCCACCTCTAAGGTGATG 1057 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || ||||| || ||||| | |||||| ||||| Sbjct 1058 GTCTTGCCAGTTAGTGTTTTGACGAAAATTTGCAT 1092 >seq88566 Length=1870 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| || ||||| | | || || ||||||||||| || || | || || || Sbjct 242 CGCAATACTAAATGCAACGTAGATTCCTTTTGAATGTTATAATCACCCAAAGTTCGTCCG 301 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| |||||||| || | | | |||| ||| || |||||||| || || ||||| ||| Sbjct 302 TCTTCCAGCTGTTTGCCAGCAAAAATTAAACGTTGCTGATCTGGTGGAATTCCTTCCTTA 361 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| || ||| | ||||| | |||||||| || || || || | || | Sbjct 362 TCTTGAATCTTGGCTTTGACATGTTCAATAGTATCGGAAGGTTCAACCTCAAGTGTGATG 421 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||||| || || ||||| | ||| || ||||| Sbjct 422 GTTTTACCCGTAAGGGTTTTAACGAATATTTGCAT 456 >seq123102 Length=1410 Score = 102 bits (112), Expect = 8e-17 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| |||| |||||| || | |||| || |||||||||||||| ||| | || Sbjct 596 CGCAGACGCAGAACCAAGTGAAGTGTTGATTCCTTTTGAATGTTGTAATCGGATAATGTG 655 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || ||| || ||||| || |||| | |||| ||| ||||| ||||| || |||||| Sbjct 656 CGTCCATCCTCAAGCTGCTTGCCGGCGAAAATTAAACGTTGTTGGTCTGGGGGAATGCCT 715 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || ||||| ||||||| ||| | | || | ||||| | || || ||||| | Sbjct 716 TCCTTATCTTGAATTTTTGCTTTAACGTTCTCGATGGTATCCGAAGGTTCAACTTCCAAT 775 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||||| ||||||| ||||| | || || ||||| Sbjct 776 GTGATAGTTTTGCCAGTCAATGTTTTAACAAATATTTGCAT 816 >seq21876 Length=2391 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| |||||||| | |||| || || ||||||||||| ||| || |||||| | Sbjct 726 CGCAGGACCAAATGAAGCGTTGATTCCTTCTGAATGTTGTAATCGGACAAGGTACGGCCA 667 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | || || |||| |||||| |||||| |||||||| || || || || || Sbjct 666 TCTTCCAATTGCTTGCCGGCGAAGATTAAACGCTGCTGATCTGGGGGAATTCCCTCCTTG 607 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || || | | ||| | || || | |||||| ||||| | || | Sbjct 606 TCCTGGATCTTAGCCTTAACGTTTTCGATGGTGTCAGACGGCTCAACTTCCAGGGTGATA 547 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || ||||||| |||||||| ||| || ||||| Sbjct 546 GTCTTGCCAGTCAAAGTTTTTACGAAGATTTGCAT 512 >seq43985 Length=4878 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 147166 GCCAATTCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTT 147225 |||||||||||||| || || | || |||||||| || ||||| ||||||| ||| Sbjct 2100 GCCAATTCACAGCTAGCTTCTAATGCGCCATAGTACATAGTTTCAAAAATTTGTTGATTT 2041 Query 147226 AGGACGGTCGCTTCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAA 147285 | || | || | ||||||||||| || ||||| ||| | || || || || ||| Sbjct 2040 AAGAGCGCAGCCTGCTCGCTCTCGTATGGGTAACGCATAAGGATTAAAGCGTCTGCAAAA 1981 Query 147286 CCCTGGATACCGACGCCGATAGGTCGATG 147314 || || || || | ||| ||||| ||||| Sbjct 1980 CCTTGTATGCCAATGCCAATAGGGCGATG 1952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475782813988560