Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_026017.1 Length=41880 Score E Sequences producing significant alignments: (Bits) Value seq139038 168 2e-37 >seq139038 Length=11747 Score = 168 bits (186), Expect = 2e-37 Identities = 490/748 (66%), Gaps = 10/748 (1%) Strand=Plus/Minus Query 30471 TGGGTCATCGTGGTAGTACCCGCGCGACAGGTTCTGTGGTTGGAACCCTTTACCTGCAAA 30530 |||||| |||||||| ||||| || | || ||||| ||||| || ||| || || | Sbjct 7748 TGGGTCGTCGTGGTAATACCCACGTGCAAGATTCTGCGGTTGAAAGCCTCGCCCAGCCCA 7689 Query 30531 TCGTAAAGTGCGCTTTGCCCCGCCATACTGGATGCACCCACGGCGTCGTCCGTCTTTAGA 30590 || || || ||||| || || ||||| || | || || ||||| || ||||| || Sbjct 7688 TCTTAGGGTTCGCTTGGCGCCACCATATTGAAGACAACCCCGGCGCCGGCCGTCGGCGGA 7629 Query 30591 CCGTCCTAGCAGGAGCGGTTTATACTTTGTCGACGCCGTGGAGGCCGCGCCGAGGCGCAT 30650 | | || | || || || || |||||||| ||||| || || |||||||||||||| Sbjct 7628 CAGACCCTCGATAAGTGGCTTGTATTTTGTCGATGCCGTTGACGCTGCGCCGAGGCGCAT 7569 Query 30651 CTCAATGATCATGCGCGCATCGTCAGGCAAGTCGTCGTCCTCTAACA-AACCTTCAAGCG 30709 |||||||| | ||| || ||||| || | || || |||| || || |||| Sbjct 7568 TTCAATGATAACGCGGGCTTCGTCTGGGAGATCTGGATCTTCTAGCAGGTCCAGCAAG-A 7510 Query 30710 TTGCTTTCTGCGCATTATAAATGTTATAGGCCGGTGCCAGTTCCCGAAGGATTGGCAGGA 30769 || ||||| ||||| | | | | ||||| || || | || | ||||||| Sbjct 7509 CCGCCTTCTGGGCATTCGGTACGGTGTGCGCCGGGGCTAGACCGCGCAATGCCGGCAGGA 7450 Query 30770 AGTCTTGACCCGTTAGCTTCCCACCAAATTTCACCCTGGCCTCGTTTTTCAGCTCTTGCT 30829 | || ||| || || || |||| || | |||||| ||| || |||| || Sbjct 7449 AATCCGCACCGGTAAGACCTGAGCCGTATTTGGCCATAGCCTCGGCTTTAAGTTCTTTCT 7390 Query 30830 TGTGGCGTTCAACTGCTGCTACCGCCGCCTC-AGCAAGAGCCGTATCAACAAAGAAGCCT 30888 | || | | || ||||| ||| | |||||| | ||||| || | || ||| Sbjct 7389 TATGCTCCTGTATGGCCTGTACCG-CGCAACGAGCAAGCTCGGTATCGACGTAAAACCCT 7331 Query 30889 CGGTCGTTGATTAACTGGTCGAGTTCCAGTACACGGTCCTCGAACTC---TGAGTTACCC 30945 ||||| || || | |||||| || | | | |||| || | ||| ||||| | Sbjct 7330 CGGTCATTAATGATCTGGTCAAGCACTAAGATCCGGTTTTCAATCTCCGTGGAGTT---C 7274 Query 30946 CAACGCGGCAGCTTATGGAAGACTTCACGCATCGCAGTGATGTCACTAACGGCGTACTTG 31005 || ||||| | |||| | |||||||| | |||||| || | ||||| | Sbjct 7273 CATGTTGGCAGTCGGTAGAAGGCCTCACGCATAGAAGTGATATCGCGCCGTGCGTAGTCT 7214 Query 31006 ACGAACAGCGCCCACTCGTCCGGGTGTGTTTCGGCGGTGTAGCGGCGGATTTTGTAGTTC 31065 || || | ||| || || ||||| || | |||||||| || || ||||| ||| Sbjct 7213 ACAAAGCGTTTCCATTCTTCGGGGTGCGTCTGCTTTGTGTAGCGCCGTATCTTGTAATTC 7154 Query 31066 TTCGGCGTCGGTTTAGAAAAACGCTTAATCAGCGCCTTGCCGCGTTTATCTTTCGCGTTG 31125 || ||||| |||||| | || |||| |||| |||||| || |||||||| ||| Sbjct 7153 TTAGGCGTGGGTTTACAGAAGCGCTGGATCAACGCCTTACCCGCCTTATCTTTGGCGAGC 7094 Query 31126 TCCGCAGATACACTCAGCACCTCACACAACGCGTCAAGTGAACCCGGCAACGCGTGGCGA 31185 ||| | | || | ||||| || || | || || |||||||||||||||| || Sbjct 7093 TCCACGGGAACGTTTAGCACTTCGCAGAGTTTCTCGAGCGAACCCGGCAACGCGTATCGG 7034 Query 31186 AACGCCCAAATCATCGTATCAATGGTGT 31213 | ||| | ||| || || ||| ||| Sbjct 7033 TAGGCCTCGACCATTGTGTCGATGATGT 7006 Score = 120 bits (132), Expect = 8e-23 Identities = 307/461 (67%), Gaps = 5/461 (1%) Strand=Plus/Minus Query 26049 TGGCCTGCCTGCTTCTGGCGGACAGGGCCTATACGCTCAACGACCTGCAAATAGTGCTCA 26108 ||||| ||||| | || || || || ||||| || || |||| |||| |||||| || Sbjct 10774 TGGCCCGCCTGATGTTGTCGCACTGGCCCTATTCGTTCGACGATCTGCGAATAGTATTCC 10715 Query 26109 AGGTTCCAGCCTTGCGAGATGAATG-CCAGATGATGCCCCCCGTCCTGTAAATTCAAACC 26167 | |||||| | | | | || | ||||||| || || ||||| || || || | || Sbjct 10714 AAGTTCCA-CGTATCACTAAAAACGGCCAGATGGTGTCCGCCGTCTTGCAAGTTAAGGCC 10656 Query 26168 ATGGCCGGCTGACGCAGGGTGTACACATAATATTTCGATTTCACCACGGTTCCACGCTTC 26227 || ||||| || ||||| | ||| || ||| | || |||||||| || Sbjct 10655 GTGCCCGGCGCTGGCCGGGTGAGCCAATAGCATAGGGATCTTCCCTTGGTTCCACAGCTC 10596 Query 26228 CATCT-GCTTATTACCCTTTGAACCTTTAGCAAACGCCTGCGCCTGTGGGAAACGCTTAA 26286 || | || || | ||| | ||||| | | ||| |||| ||||| ||| | Sbjct 10595 GATATTGCGGGTTGCGGTTTTA-CCTTTGCCCAGTGCCACGGCCTCGGGGAATTTCTTCA 10537 Query 26287 GGATGCGCTCCAGTTCATGCTTGAACTGATAGGCAACCAGTAACGGCGCACCCTGTAACT 26346 ||||||| ||| | ||||| | | |||||| || | | |||||||| | | || Sbjct 10536 GGATGCGTTCCCGGTCATGGCGATAGTAATAGGCCACTAACAGTGGCGCACCGTTGAGCT 10477 Query 26347 CCTCAACAATCGACTCCAGCGCATCCAGTTTCGTGTCGTGCACTTTCTCCCAGTCTTTCG 26406 | ||| ||| ||||| ||||| ||||| ||| || || | ||||||||| | Sbjct 10476 CTTCATAAATAGACTCGAGCGCGTCCAGCTTCTCGTTATGAATAAGCTCCCAGTCACCTG 10417 Query 26407 TTGCTTCTCCATCTGGTCCTGATACATACACGGCACCGGACGCAATCTGCAAACACTTCG 26466 | | || || || | | | ||||| ||||||||||| || |||||||| || || | Sbjct 10416 TCGGCTCACCGTCGGCGTCGGTCACATAAACGGCACCGGAAGCTATCTGCAAGCATTTAG 10357 Query 26467 ATGTCTTCGCTGCCGCATTAGCCGCTTCAACTTCTCCGCTC 26507 ||||| || ||||||||| | || || |||| ||| ||| Sbjct 10356 CCGTCTTGGCCGCCGCATTAACGGCGTCGACTT-TCCCCTC 10317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133673317416184