Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq119770 104 2e-17 seq138766 87.8 2e-12 >seq119770 Length=1537 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 25168 AAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA 25227 || ||| |||||| | || || |||||| |||| || || | ||||| | || || || Sbjct 1099 AACCAAAATGCAAATTTTCGTCAAAACACTAACTGGCAAGACCATCACCTTAGAGGTGGA 1040 Query 25228 AGCCAAC-GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGC 25286 |||| | || || || || | || ||| || ||| |||||||| ||||| || | Sbjct 1039 -GCCATCTGACACCATTGAAAATGTCAAAGCTAAGATTCAGGATAAAGAAGGTATTCCAC 981 Query 25287 CCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCG 25346 | ||||| ||| | || |||| || ||| |||||| | ||||||| | | | | || Sbjct 980 CAGATCAACAACGTCTTATTTTCGCCGGAAAACAATTAGAAGATGGACGTACTCTATCCG 921 Query 25347 ATTACAATATTCAAAAAGAATCCACCATTCA 25377 | |||||||||||||||||||| || |||| Sbjct 920 ACTACAATATTCAAAAAGAATCAACACTTCA 890 >seq138766 Length=1258 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || ||||||||| |||| |||||| | || || | || || || |||| | Sbjct 640 ATGCAAATCTTCGTAAAAACACTAACGGGAAAAACAATAACACTGGAGGTGGA-GCCATC 698 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || | | | ||| | || || ||||| ||||||||||| || || || ||||| Sbjct 699 CGAAAATGTTGAGAATGTCAAGGCCAAAATACAGGATAAAGAGGGGATTCCACCAGATCA 758 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| ||||| || | | || || || || || |||| |||| | ||||||||| Sbjct 759 GCAGAGACTGATCTTTGCTGGTAAGCAGCTTGAGGATGGAAGAACACTTTCCGATTACAA 818 Query 25354 TATTCAAAAAGAATCCACCATTCAT 25378 ||| || ||||| || || || ||| Sbjct 819 TATACAGAAAGAGTCTACAATCCAT 843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444320792550720