Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq119770 104 2e-17 seq88566 102 7e-17 seq123102 91.5 1e-13 >seq119770 Length=1537 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 106257 AAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCC 106316 |||||||||||||| || |||||| | |||||||||||||| ||| | || || || Sbjct 1095 AAAATGCAAATTTTCGTCAAAACACTAACTGGCAAGACCATCACCTTAGAGGTGGAGCCA 1036 Query 106317 GGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGAT 106376 || | ||| | || ||| || ||| || |||||||| | || ||| Sbjct 1035 TCTGACACCATTGAAAATGTCAAAGCTAAGATTCAGGATAAAGAAGGTATTCCACCAGAT 976 Query 106377 CAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTAC 106436 |||||| | ||||||| || || ||||||||||||||| ||| | ||| ||| Sbjct 975 CAACAACGTCTTATTTTCGCCGGAAAACAATTAGAAGATGGACGTACTCTATCCGACTAC 916 Query 106437 AACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || || ||||||||||| ||||| || | |||||| | |||| || || Sbjct 915 AATATTCAAAAAGAATCAACACTTCACCTGGTATTGCGTCTACGTGGTGG 866 >seq88566 Length=1870 Score = 102 bits (112), Expect = 7e-17 Identities = 169/244 (69%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 106243 TTTATAAGAGTTTAAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCG 106302 |||| || ||| | |||||||||| || |||||||| | || || || ||||| || Sbjct 473 TTTAGAATTGTTCAGAAATGCAAATATTCGTTAAAACCCTTACGGGTAAAACCATCACAC 414 Query 106303 TGGAAACAGAACCCGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAG 106362 | || ||||| |||| || ||| || || ||| || ||| || || |||| Sbjct 413 TTGAGGTTGAACCTTCCGATACTATTGAACATGTCAAAGCCAAGATTCAAGATAAGGAAG 354 Query 106363 GCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAA 106422 | | || ||||| ||| | | |||| ||| |||||||| | ||||| || Sbjct 353 GAATTCCACCAGATCAGCAACGTTTAATTTTTGCTGGCAAACAGCTGGAAGACGGACGAA 294 Query 106423 CTATGGGCGATTACAACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAG 106482 || |||| ||||| ||||| ||||| |||||||| | |||||||||||| | | ||| Sbjct 293 CTTTGGGTGATTATAACATTCAAAAGGAATCTACGTTGCATTTAGTATTGCGTCTCAGAG 234 Query 106483 GAGG 106486 |||| Sbjct 233 GAGG 230 >seq123102 Length=1410 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| ||||||||||||||||||||||| || || || ||||| ||||| Sbjct 816 ATGCAAATATTTGTTAAAACATTGACTGGCAAAACTATCACATTGGAAGTTGAACCTTCG 757 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | | | | || ||| ||||||| || || |||||| | ||| || ||| Sbjct 756 GATACCATCGAGAACGTTAAAGCAAAAATTCAAGATAAGGAAGGCATTCCCCCAGACCAA 697 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGAT--TCTAAAACTATGGGCGATTACA 106437 ||| | | |||| || ||||| || | || ||| | | | ||| |||||||| Sbjct 696 CAACGTTTAATTTTCGCCGGCAAGCAGCTTGAGGATGGACGCACATTAT--CCGATTACA 639 Query 106438 ACATACAAAAAGAATCTACACTACATTTAGT 106468 |||| ||||| ||||| ||||| || || || Sbjct 638 ACATTCAAAAGGAATCAACACTTCACTTGGT 608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 401647802955968