Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq21876 125 6e-24 seq88566 111 1e-19 seq123102 105 6e-18 seq138766 87.8 2e-12 >seq21876 Length=2391 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||||| | || |||||||| | ||| ||||| |||||||||||||||| | Sbjct 738 CCACCACGTAGACGCAGGACCAAATGAAGCGTTGATTCCTTCTGAATGTTGTAATCGGAC 679 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||| || | || |||| ||||| || || || || || |||||||| || | ||| Sbjct 678 AAGGTACGGCCATCTTCCAATTGCTTGCCGGCGAAGATTAAACGCTGCTGATCTGGGGGA 619 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||||| |||||| ||| | || | | ||||| || || || Sbjct 618 ATTCCCTCCTTGTCCTGGATCTTAGCCTTAACGTTTTCGATGGTGTCAGACGGCTCAACT 559 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| || || || ||||||||||| || || || ||||| Sbjct 558 TCCAGGGTGATAGTCTTGCCAGTCAAAGTTTTTACGAAGATTTGCAT 512 >seq88566 Length=1870 Score = 111 bits (122), Expect = 1e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 ||| || ||||| |||||| |||||||||||||| ||||| |||| ||||| |||| Sbjct 244 CAATACTAAATGCAACGTAGATTCCTTTTGAATGTTATAATCACCCAAAGTTCGTCCGTC 303 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 |||||||| || || ||||| || || || ||||| || | |||| | ||||| || Sbjct 304 TTCCAGCTGTTTGCCAGCAAAAATTAAACGTTGCTGATCTGGTGGAATTCCTTCCTTATC 363 Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT 35703 ||||| || | | | | | || ||| | ||| ||||| | ||||| || Sbjct 364 TTGAATCTTGGCTTTGACATGTTCAATAGTATCGGAAGGTTCAACCTCAAGTGTGATGGT 423 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 ||||||||| | ||||| || ||||| |||||| Sbjct 424 TTTACCCGTAAGGGTTTTAACGAATATTTGCATT 457 >seq123102 Length=1410 Score = 105 bits (116), Expect = 6e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 |||||||||||||||||||||| || || || | || || |||||||| || || || Sbjct 626 TCCTTTTGAATGTTGTAATCGGATAATGTGCGTCCATCCTCAAGCTGCTTGCCGGCGAAA 685 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || || || || ||||| | |||| || ||||| | | ||| |||||||| | ||| Sbjct 686 ATTAAACGTTGTTGGTCTGGGGGAATGCCTTCCTTAT-CTTGAATTTTTGCTTTAACGTT 744 Query 35666 -GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || || | ||| || |||| ||||| ||||| || ||||| ||||| || Sbjct 745 CTCGATGGTATCCGAAGGTTCAACTTCCAATGTGATAGTTTTGCCAGTCAATGTTTTAAC 804 Query 35725 AAATATCTGCAT 35736 |||||| ||||| Sbjct 805 AAATATTTGCAT 816 >seq138766 Length=1258 Score = 87.8 bits (96), Expect = 2e-12 Identities = 163/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 35504 TTATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAA 35563 || || || ||||| | ||||| || | ||| | ||| ||| || || || |||||| Sbjct 872 TTCTTACCTCCACGAAGCCTCAGAACAAGATGGATTGTAGACTCTTTCTGTATATTGTAA 813 Query 35564 TCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCC 35623 |||| | |||| | || || ||||||||||| ||||| |||| | |||||| || Sbjct 812 TCGGAAAGTGTTCTTCCATCCTCAAGCTGCTTACCAGCAAAGATCAGTCTCTGCTGATCT 753 Query 35624 GAAGGAACGCTCTCCTTGTCCATGATCTTTTG--CTTCAGAGTTGCCACCGTGTCGCTCG 35681 | |||| | ||| || ||| || | ||||| ||| | | | | || | ||| | Sbjct 752 GGTGGAATCCCCTCTTTATCC-TG-TATTTTGGCCTTGACATTCTCAACATTTTCGGATG 695 Query 35682 ATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 |||||||||| || || ||||| ||||| | ||||| || || || |||||| Sbjct 694 GCTCCACCTCCAGTGTTATTGTTTTTCCCGTTAGTGTTTTTACGAAGATTTGCATT 639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450010086913680