Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq88566 174 2e-38 seq123102 123 3e-23 seq119770 122 9e-23 seq21876 96.9 3e-15 >seq88566 Length=1870 Score = 174 bits (192), Expect = 2e-38 Identities = 178/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||||||||| ||||| || | || | ||| ||||||||||||||||| || || || Sbjct 230 CCTCCTCTGAGACGCAATACTAAATGCAACGTAGATTCCTTTTGAATGTTATAATCACCC 289 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | ||| || ||||||||||| |||||||| ||||| |||||||| || || Sbjct 290 AAAGTTCGTCCGTCTTCCAGCTGTTTGCCAGCAAAAATTAAACGTTGCTGATCTGGTGGA 349 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAAT-GTGTCGGACGATTCCAC 134665 || ||||| || |||||||| || ||||| | || |||| || ||||| | ||| || Sbjct 350 ATTCCTTCCTTATCTTGAATCTTGGCTTTGA-CATGTTCAATAGTATCGGAAGGTTCAAC 408 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTT 134715 || || || ||||||||||| || | ||||||||||| |||||||||| Sbjct 409 CTCAAGTGTGATGGTTTTACCCGTAAGGGTTTTAACGAATATTTGCATTT 458 >seq123102 Length=1410 Score = 123 bits (136), Expect = 3e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| || | ||| || || |||||||||||||||||||| ||| | ||| | Sbjct 599 AGACGCAGAACCAAGTGAAGTGTTGATTCCTTTTGAATGTTGTAATCGGATAATGTGCGT 658 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| || ||||| ||||| || || || || || |||||||| Sbjct 659 CCATCCTCAAGCTGCTTGCCGGCGAAAATTAAACGTTGTTGGTCTGGGGGAATGCCTTCC 718 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || |||||||||||| ||| || || | || || || | ||| || || | || Sbjct 719 TTATCTTGAATTTTTGCTTTAACGTTCTCGATGGTATCCGAAGGTTCAACTTCCAATGTG 778 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| || || || |||||||| || |||||||| Sbjct 779 ATAGTTTTGCCAGTCAATGTTTTAACAAATATTTGCAT 816 Score = 87.8 bits (96), Expect = 2e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCT 134576 || |||||||| ||||| || || ||| | ||| | || || | ||||||||| Sbjct 848 GTAGATTCCTTCTGAATATTATAATCGGACAATGTGCGTCCATCCTCTAACTGTTTGCCA 907 Query 134577 GCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTG 134636 || ||||||||||| || ||||| || || || |||||||| ||||||||||| ||| Sbjct 908 GCGAAAATCAAACGTTGTTGATCTGGTGGGATTCCTTCTTTATCTTGAATTTTAGCTTTA 967 Query 134637 ACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAA 134692 || || | || || || | || || || | ||| |||||||| || || || Sbjct 968 ACATTTTCAATGGTATCAGAAGGCTCAACCTCCAAAGTGATGGTTTTTCCCGTCAA 1023 >seq119770 Length=1537 Score = 122 bits (134), Expect = 9e-23 Identities = 162/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || ||||| || ||||| || || ||||| |||||||| ||||||||| | || | Sbjct 875 AGACGCAATACCAGGTGAAGTGTTGATTCTTTTTGAATATTGTAGTCGGATAGAGTACGT 934 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || | ||||| || || ||||| | ||| || ||||| || || || |||||| Sbjct 935 CCATCTTCTAATTGTTTTCCGGCGAAAATAAGACGTTGTTGATCTGGTGGAATACCTTCT 994 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || |||||| || | ||||| || | ||||| || | || Sbjct 995 TTATCCTGAATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGCTCCACCTCTAAGGTG 1054 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTT 134720 ||||| || || |||| ||||| |||||||||||||||||| || Sbjct 1055 ATGGTCTTGCCAGTTAGTGTTTTGACGAAAATTTGCATTTTGGTT 1099 >seq21876 Length=2391 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || ||||| |||||||| ||||||||||| ||| | ||| | || || | || Sbjct 714 TGAAGCGTTGATTCCTTCTGAATGTTGTAATCGGACAAGGTACGGCCATCTTCCAATTGC 655 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 ||||| || || || |||||||||||||| || || || || || || || || || || Sbjct 654 TTGCCGGCGAAGATTAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGGATCTTA 595 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 || || || | ||||| |||| || || || || || || || || || || Sbjct 594 GCCTTAACGTTTTCGATGGTGTCAGACGGCTCAACTTCCAGGGTGATAGTCTTGCCAGTC 535 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 |||||||| ||||| |||||||| Sbjct 534 AAAGTTTTTACGAAGATTTGCAT 512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504519979675920