Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq43985 428 6e-115 >seq43985 Length=4878 Score = 428 bits (474), Expect = 6e-115 Identities = 1220/1877 (65%), Gaps = 115/1877 (6%) Strand=Plus/Minus Query 68449 TAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGAT 68508 || ||||| ||| ||| || ||| |||| |||| || |||| ||||||||| | |||| Sbjct 2681 TAAAAATGTATAGATGTAAGCTTGCCATAATTTGGTTCAGCTACATGAATATTAAACGAT 2622 Query 68509 TGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGA 68568 ||||||||||||||||| || || | ||| || ||||| || || || |||| | Sbjct 2621 TGACTTTGATCGATGAATGCGCCACGATCGGCTGCCATCTTCATTGTAGTCTTCACCGAT 2562 Query 68569 ATTTCCCAAATAGTCTTAAAAA--TC---TGTTTGATATCATCTGGAAGGCTCG-TATTT 68622 || ||||||| || || ||| || | ||| | | |||| || || | Sbjct 2561 ATCTCCCAAACTGTTTTGTAAAGTTCACGTATTTTTGTTGGTATGGAT---TCAATACCT 2505 Query 68623 TGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTC 68682 || || || |||| | ||||||| || || || || |||| |||||| Sbjct 2504 TGTATTGAACCACGGCTTGTTATAATTTTAGATTTCATATCTTCATCCCACAAACCCAAT 2445 Query 68683 TCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTA 68742 || || | | | | | | ||| ||||||| | ||||||||| || || | || | Sbjct 2444 TCAGTGAGATCGCGTAACAAATGATGATTAACAACTTGAAATTCACCCGAAAGTACGCGT 2385 Query 68743 CGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCA 68802 ||| | |||||||| || || ||||| | ||||||||||| |||| |||||| ||| Sbjct 2384 CGATTATAAATATTTGAAGTGTAGGGTTCAAACGATTCATTATTGCCCATAATTTGTGCA 2325 Query 68803 GTTGATGCAGTTGGCATAGGTGCCACCAATAAAC----------------------TATT 68840 ||||||||||| |||||||| || | | |||| |||| Sbjct 2324 GTTGATGCAGTGGGCATAGGGGCTAAAAGTAAAGAGTTGCGTACGCCATATTGTTTTATT 2265 Query 68841 T-CT-----------AAGA----------CCATGTGTTATGATTTTATCTTTTAGATGTT 68878 | || |||| |||||| | | ||||| ||||| | Sbjct 2264 TTCTNNNNNNAAGTAAAGAGTTGCGTACGCCATGTTGTTTTATTTTCTCTTTCAATACAG 2205 Query 68879 TCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTAC 68938 ||||||||| || |||| |||| || ||| | ||| ||||| || ||||| || | Sbjct 2204 ACCAATCCCAGAGGTCAGTTGGTTTTTTATCCCACATATCATATTGAAGTATTCCTTTGC 2145 Query 68939 TTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTG 68998 | | ||| || | ||| |||||||||| || | | |||||| | |||||| || | Sbjct 2144 TGACTGGTGAGCCTTCATAAGTTTCATAAGTACCATATTTTTCAGCCAATTCACAGCTAG 2085 Query 68999 CCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGA-GATCTTGTGCTTCT 69057 | |||||||| || || || || ||||| ||||| | | ||| | || | || || Sbjct 2084 CTTCTAATGCGCCATAGTACATAGTTTCAAAAATTTGTTGATTTAAGAGCGCAGCCTGCT 2025 Query 69058 AGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATA 69117 | || ||| |||| ||| | | ||| || || || ||||| || || || | ||||| Sbjct 2024 CG-CTCTCGTATGGGTAACGCATAAGGATTAAAGCGTCTGCAAAACCTTGTATGCCAATG 1966 Query 69118 CCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATA 69177 || ||||| | |||||| ||| || | | || || || | ||||||| ||| || Sbjct 1965 CCAATAGGGCGATGTCTGAAATTAGACTTCTTTGCCTCGGGCAATGGATAATGATTTATG 1906 Query 69178 TCTATAATTTTATTAAGATTTCGGACTACT---ACTTTAACCACGTCCTTTA---GTTTG 69231 || || |||||||| ||||| || ||| | | ||||| ||||| | | || Sbjct 1905 TCGATGATTTTATTTAGATTACGTGTTACAGTCATTGTAACC---TCCTTCAAACGCTT- 1850 Query 69232 AGAAAATCAAATCGTCCATCTA---TAACAAACATATTCAGTGCTACAGATGCTAGATTA 69288 |||||| | | ||| ||||||||||||| ||||| | ||||||| |||| Sbjct 1849 --AAAATCGTACGTTTTTTCTGGTGTAACAAACATATTGAGTGCAATCGATGCTAAATTA 1792 Query 69289 CAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACAT 69348 ||||| || || |||| | || ||| | | ||| |||||||||| |||||||||| Sbjct 1791 CAAACAGCCACTTCATCTGGTGCTGAATACTCAACTATTTCTGTACATAAATTACTACAT 1732 Query 69349 TTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATA 69408 || ||||| || | |||||| |||||||||||| | ||||| || |||||||| || ||| Sbjct 1731 TTAATAGTGCCAATATTTTGTTGATTACTCTTTCTATTACATGCATCCTTGTACAGCATA 1672 Query 69409 AACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTT 69468 | || || || || || | || ||||| ||||| | ||||| ||| | ||| Sbjct 1671 TATGGTGTGCCTGTCTCTACTTGCGATTCAATAATGGCAAACCAAA-GACTTTGTGCTTT 1613 Query 69469 ATTACGGTCTTGTAA-CGCTTC--TCTTTTTCATATTGTGTATATAGCCGTTCGAATTCA 69525 ||| |||| | | ||| || |||| ||||||| ||||||| ||| |||||| Sbjct 1612 --TACTTTCTTATTAGCGCGTCCGTCTTGCTCATATTTAGTATATAATTTTTCAAATTCA 1555 Query 69526 TCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCA 69585 || ||||| || |||| ||| || ||||| | | ||||||||| | ||||| | ||| Sbjct 1554 TCGCCCCATACCTCATGCAAGCCGGGACACTTGTGTGGACACATAAGCGACCAATCTTCA 1495 Query 69586 TCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTG 69645 | | | | ||| ||||||||||| ||||| |||||||| | || ||| | |||||| Sbjct 1494 TTAGCTTCAACACGTTTCATAAAAAGATCTGGAATCCATAATGCATAAAATAAATCTCTA 1435 Query 69646 GTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAA 69705 | ||||| ||||| | || |||||||| || | ||| | ||| || | ||||| | | Sbjct 1434 GCTCTATGCTCTTCTGTGCCAGTATTTTTCTTTAAATCCAAAAATTCAAATATATCTGCA 1375 Query 69706 TGCCATGGTTCTA-----------------------------GATATATCGCCATGACTC 69736 ||||||||||||| Sbjct 1374 TGCCATGGTTCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 1315 Query 69737 CCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCA 69796 ||||||||| || || ||||||| || | || ||||| | || |||| || Sbjct 1314 NNGGTCGTTTACCACCGCCTTGATCTACATAACGTGCTACATTATTGAATACCCTCAACA 1255 Query 69797 TCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAA 69856 | || | | |||||| ||| | |||||||| || | ||| | ||| |||| || | Sbjct 1254 TTGGTACCAAACCATTCGATGTGCCATTTGTGCCCGCAATTGCTGTACCTTTTGCTCGTA 1195 Query 69857 T---AT-TACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGT 69912 | || ||| || | || || || || || || ||| || |||| |||||| | Sbjct 1194 TGCAATGTAC--ATTG--AGTCCAATACCACCAGCTGATTTGGAAATTAAAGCACATTGA 1139 Query 69913 TTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 | || | |||| || || || ||| | ||| | | ||| ||||| Sbjct 1138 TGTGCTGAGGTGAATATGCCATCAATTGAATCGGAAACCATAGTCAAAAGGAAACATGAT 1079 Query 69973 GACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCAT 70032 || | || | ||| |||| | ||| || | ||| || || || || || || | Sbjct 1078 GATAGCTGTGGTTGTCTAGTAGCTGCAGCGAAAAGTGTTGGTGACGCATGTGTAAAATAA 1019 Query 70033 TTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCC-CACTGATGAATTCC 70091 ||| || |||| |||||||||||||||| | | || |||||| | | | || || || Sbjct 1018 CGTTCTGAGAGCAAATTGTATGTTTCAATAACAGCATCAATATCCTCTCCG-TGTATACC 960 Query 70092 TATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAA 70151 || | || ||||| ||||||||||| || || || || ||||| ||| | ||| | Sbjct 959 AATGGATACGCGCATTAACATATGCTGTGGACGCTCAACAATTTTACCATTCAGTTTAAG 900 Query 70152 CAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTA 70211 | || || |||||| |||||||| |||||||| || || ||| || | || || Sbjct 899 TAAATAAGAACGTTCCAGCGTTTTAAAACCAAAATAATTATAACCAAAATCACGATCATA 840 Query 70212 AATAATAACAGAATTTA 70228 || ||| | ||||||| Sbjct 839 GATTATAGCTGAATTTA 823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685714900987440