Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_027331.1 Length=170341 Score E Sequences producing significant alignments: (Bits) Value seq2788 168 7e-37 >seq2788 Length=136445 Score = 168 bits (186), Expect = 7e-37 Identities = 339/497 (68%), Gaps = 12/497 (2%) Strand=Plus/Plus Query 143073 GGACTGAACAGAGTTATGTATTCATCTTTGCCAAGACGTTCCATCATCAGGTCGTTGATT 143132 || ||||||||||| |||| | |||| | ||||| | |||||| | |||||| Sbjct 19220 GGGCTGAACAGAGTGATGTCGCCGCCTTTAACCAGACGCTGATACATCAGTTTGTTGATC 19279 Query 143133 TGAAGACCATAGTCCAGGTGACGAATTCGGTTTTCATCTACGCCTTTGTTGTTCTTAAGT 143192 || | || ||||||| |||||||| ||||| | || || || |||||| || || Sbjct 19280 TGCACGCCGTAGTCCATGTGACGAACGCGGTTGCCTTCAACACCACGGTTGTTTTTCAGA 19339 Query 143193 ACGAGGAGATTCTCGACTTCAAGATGCCAAATTGGATAGTACAATGTTGCGGCACCACCA 143252 || || || | || ||||| || ||||| || || ||| ||| || || ||||| || Sbjct 19340 ACCAGCAGGCTTTCAACTTCCAGGTGCCACATCGGGTAGAACAGGGTCGCAGCACCGCCG 19399 Query 143253 CGAACTCCGCCTTGGGAACAGGATTTAACTGCAGTTTGGAAGTGTTTCCAGAAAGGAATA 143312 || || ||||| || || ||||||||||| || || |||||||| || |||| || ||| Sbjct 19400 CGCACGCCGCCCTGAGAGCAGGATTTAACCGCCGTCTGGAAGTGCTTATAGAACGGGATA 19459 Query 143313 ACTCCAGTATGCTTGACTTCACCGTTTCCGATTTTTGAACCTTCTGCACGCAACATCCCC 143372 || ||||| |||||||| | || ||| ||||| | || Sbjct 19460 CAGCCGGTATGGAATGCTTCACCGCCGCGAATCGGGCTACCCAGCGCACGGATGCGGCCA 19519 Query 143373 GCGTTAATGCCAATACCTGCACGCTTACTGATA--TACTCAATAATGCTTGCACTGGCTT 143430 ||||| ||||| |||||||| |||| ||| | || | | | | | || |||| Sbjct 19520 GCGTTGATGCCGATACCTGCGCGCT--GTGAAACGTATT---TCACGATGGCGCTGGAGG 19574 Query 143431 T---GTTAATTGACTTAAGTGAGTCACCAGCTTCAATAACAACACAAGAGCTAAACTGAC 143487 | ||| || || | || ||| || || || | || |||||||| ||||| | Sbjct 19575 TCGCGTTGATGGAGTCCAGGCTGTCGCCGCACTCGATCAGTACGCAAGAGCTGAACTGGC 19634 Query 143488 GAGTCGGTGTACGAGCCCCGGCCATAATTGGAGTAGGCAAAGAAAT-TTGACGAGTAGAT 143546 ||||||| || || | |||| ||||||||| ||||||| |||||| |||| | || || Sbjct 19635 GAGTCGGGGTGCGCACGCCGGACATAATTGGCGTAGGCAGAGAAATCTTGAAG-GTTGAA 19693 Query 143547 ACGGCGTCATAAAAACG 143563 || || ||||| ||||| Sbjct 19694 ACCGCATCATAGAAACG 19710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544016013086160