Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_027339.1 Length=38389 Score E Sequences producing significant alignments: (Bits) Value seq139046 282 1e-71 seq1602 104 6e-18 seq81489 86.0 2e-12 >seq139046 Length=22897 Score = 282 bits (312), Expect = 1e-71 Identities = 964/1473 (65%), Gaps = 47/1473 (3%) Strand=Plus/Minus Query 746 CCACACACCAAGGGGGAGTGGGCATTCAAGAGGATGCCCATCACACTGGAACCGTGGCAG 805 || ||||| || || || ||||| ||| ||||| |||| || |||||||||||| Sbjct 22407 CCTCACACAAAAGGTGAATGGGCTGCGAAGGGGATGAAGATCAAGCTCGAACCGTGGCAG 22348 Query 806 CTCTTTGTGATCTGCTGTGCGTTT-GGCTGGGTCAATAAAGGCTCCCGGCTG-CGCCGCT 863 ||||| | | | || || || ||| | ||||| || |||| || || | Sbjct 22347 -TCTTTCGGTTTGGGGATGATTTACGGGTGGTTGCGCAAAGGGTCA-GGCTATCGTCGTT 22290 Query 864 TCAGGGAGGTGTATACCGAAATCCCCCGTAAGAACGGCAAATCGGCAATCTCTGCCGGTG 923 | | |||| |||| |||| | |||||||| ||||| || || | | | ||||| Sbjct 22289 TTCGTGAGGCGTATTTCGAAGTTCCCCGTAAAAACGGTAAGTCTGTTCTGGCCGCCGGGA 22230 Query 924 TTGCCCT-GTATTGTT--TTGCCTGTGATAACGAGTTTGGCGCGGAAGTGTATTCCGGTG 980 | | | | | |||| | ||| ||| |||||| ||||| ||||| || || || | Sbjct 22229 TAGGCGTTGCGATGTTCGTCGCC---GATCGCGAGTTCGGCGCCGAAGTATACTCAGGCG 22173 Query 981 CCACGACAGAGAAACAGGCGTGGGAAGTCTTTCGCCCGGCGCGACTGATGTGTAAACGCA 1040 | |||||| ||||||||||| ||| || || |||||||| || | ||| || | | Sbjct 22172 CAACGACACAGAAACAGGCGATGGAGGTTTTCCGCCCGGCCAGAATCATGA-TACAGAAA 22114 Query 1041 CACCCATG-CTGACGGAAGCGTTCGGGATTGAGGTTAACGCCTCAAACATGAACCGTCCG 1099 |||| ||| |||| || ||| |||| || ||| ||||| | |||||| Sbjct 22113 AGCCCAGAACTGCAACAAGCCGCAGGTATTCAGGTGAATGCC-CAAACTTTGGCCGTCCC 22055 Query 1100 GAGGA-TGGCGCGCGGTTTGAACCGCTGATCGGTAACCCCGGTGATGGTTCATCACCCCA 1158 | | |||| | |||||||||||| | | || | ||||| |||||| || ||| Sbjct 22054 CGGCAATGGCTCCCGGTTTGAACCGGTCGTAGGCGATCCCGGAGATGGTGCAAGCCCCTC 21995 Query 1159 CTGTGCCGTGGTGGATGAATATCACGAGCACGCCACCGATGCGCTTTATACCACGATGCT 1218 ||| || | | ||||||| |||||| ||| ||| || || ||| ||| ||||| Sbjct 21994 CTGCGCGATTATCGATGAATTTCACGAACACCAGACCTCAGCACTGTATGACACTATGCT 21935 Query 1219 TACCGGGATGGGCGCGCGACGTCAGCCACTGATGTGGGCCATCACCACCGCCGGGTACAA 1278 ||||| |||||||| || || ||||| | | | |||||| || || |||||| Sbjct 21934 CACCGGTATGGGCGCCCGCCGGCAGCCGTTACTATTCATCATCACGACGGCAGGGTACCT 21875 Query 1279 CATTGAGGGGCCGTGCTACGACAAGCGGCGGGGAGGTATCGAGATGCTCAACGGTTCGGT 1338 |||| || ||||||||| |||||| | | | | || |||||| || | || Sbjct 21874 GCTTGACGGCCCGTGCTACACCAAGCGTAAAGAATGCCTAGAAATGCTCGACCAGACTGT 21815 Query 1339 ACCCAACGATGAACTGTTCGGGATCATCTATACCGTTGACGAAGGCGATGACTGGACCGA 1398 || | || || || || | || | | | || || | ||||| ||||| || Sbjct 21814 GCCAGATGAGGAGCTTTTTGCCTATATTTGGGACTTGGATGAGGAGGATGATTGGACAGA 21755 Query 1399 CCCGCAGGTGCTGGAAAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTTT 1458 ||| | ||| ||||| || || ||| | |||||||| || | || || |||| Sbjct 21754 TCCGGCGAATTTGGCTAAAGCAAACCCGAATCTCGGCGTGTCCGTATTCCGAGA--TTTT 21697 Query 1459 GTTAAGTCAGCAGCAGCGTGCGAA------AAATAACGCCCGTCTGGCA--AACGTCTTT 1510 || || ||| |||| || || |||| | | | | || ||||| | Sbjct 21696 CTTGAG--AGC--CAGCTCGCTAAGGCTGTAAATCAGCCAAGATTCGCCGGAACGT--TC 21643 Query 1511 AAAACAAAACACCTCAATATCTGGGTGTCGGCGCGTTCGGCGTATTTCAACCTGGTGAGC 1570 |||||||| || | || ||| | | | | | ||||||| |||| | | Sbjct 21642 AAAACAAAGCATTTGAACCAGTGGACCGCCTCAAAAGCAGGCTTTTTCAACATGGTTAAC 21583 Query 1571 TGGCAGAGCTGCGAGGATAAATCACTGACCCTTGAGCAGTTCGAGGGGCA-GCCGTGCAT 1629 ||| | | ||||| |||||| | ||||| | || || ||| | || | | || || Sbjct 21582 TGGAATAAGTGCGAAGATAAAACGCTGACGTTAGACCAATTCTACGGCAACGAAGTTAAT 21523 Query 1630 TCTGGCCTTTGACCTGGCGCGTAAGCTGGATATGAACAGCATGGCGCGACTTTATACCCG 1689 | |||||| ||| | ||||||||||| || ||||||||||||| || || | || Sbjct 21522 TTAGGCCTT-GACTTAGCGCGTAAGCTAGACCTGAACAGCATGGCACGGCTGTTCTGGCG 21464 Query 1690 TGAGATTGACGGTAAAACGCATTACTACAGTGTGGCCCCGCGTTTCTGGGTACCGTATGA 1749 || || ||||||||| |||||||| | | ||||| ||||||| |||||||| Sbjct 21463 CGATATCGACGGTAAACGCCATTACTATTCCATATCGCCGCGGTTCTGGGCGCCGTATGA 21404 Query 1750 CACGGTGTACAGCGTCGAGAAAACTGAAGATCGCCGGACCGCCGAACGCTTTCAGAAATG 1809 |||| | ||| || || || ||| || | || || ||| |||||| || Sbjct 21403 CACGATATACGATGTGGATAA----TAAG-----CGTATGGCTGAGCGCCTTCAGACTTG 21353 Query 1810 G-GTGGAAATGGGCGTCCTGACCGTTACCGATGGTGCAGAGGTGGATTATCGCTACATCC 1868 | || | ||| || || | || || || || || || || ||||| || | Sbjct 21352 GCTTGCAGGTGGATATCTCGAGAG-CACAGACGGCGCTGAAGTTGACTATCGGGCTATTC 21294 Query 1869 TCGAAGAGGCCAAAGCGGCGAACAAAATCAGCCCGGTCAGCG-AGTCACCCATCGACCCC 1927 | | | ||| | | | ||| | || ||| || ||| | || | || ||||| Sbjct 21293 TGGCCGCTGCCGTGGAGACTAACGAGGCCAACCCAGT-GGCGCATGCAGCGATAGACCCT 21235 Query 1928 TTCGGGGCGACCGGGCTCTCACATGACCTTGCTGATGAAGACCTGAATCCCGTCACTATC 1987 ||| || |||| ||| || | || | ||| || | | | | || ||||||||| Sbjct 21234 AGCGGAGCTACCGCGCTGAGCCACGGGCTGGATGACGAGGGCTTAACGCCAGTCACTATC 21175 Query 1988 GTCCAGAAC-TTCACCAATATGTCCGATCCGATGAAAGAGCTGGAAGCAGCGATTGAATC 2046 | || ||| |||| | ||||||| || || ||||| || || |||||||| || ||| | Sbjct 21174 ATTCAAAACTTTCAGC-ATATGTCAGACCCAATGAAGGAACTCGAAGCAGCAATAGAAGC 21116 Query 2047 GGGACGTTTTCATCATGACGGCAATCCCATCATGACCTGGTGTATCGGCAACGTGGTCGG 2106 || || || ||||| ||||| || || |||||||| | |||||| |||| ||| |||| Sbjct 21115 CGGTCGATTCCATCACGACGGAAACCCGATCATGACATTCTGTATCAGCAATGTGATCGG 21056 Query 2107 CAAAAACATGCCGGGTAACGATGATGTGGTGAAGCCTGTCAAGGAGCAGGCGGAAAACAA 2166 ||| || | |||||||| || ||||| || | ||| || |||||| ||| || ||||| Sbjct 21055 TAAATACCTTCCGGGTAATGACGATGTCGTCAGGCCAGTGAAGGAGTCGGCCGACAACAA 20996 Query 2167 AATTGACGGTGCAGTTGCGCTGATTATGGCGGT 2199 ||| |||||||| || || |||| ||||| || Sbjct 20995 AATAGACGGTGCCGTCGCATTGATAATGGCTGT 20963 >seq1602 Length=1372 Score = 104 bits (114), Expect = 6e-18 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 31566 AATAAAAACATCTCAGAATGGTGCATCCCTCAAAACGAGGGAAANNNNNNNNNNNNNNNN 31625 ||||||||| ||||||||||| || |||||||||||||||| | Sbjct 754 AATAAAAACGTCTCAGAATGGGACACCCCTCAAAACGAGGGAGAATCCCTCAAATTAGGG 813 Query 31626 NNNNNAACATCCCTCAAATTGGGGGATTGCTATCCCTCAAAACAGGGGGACACAAAAGAC 31685 | |||||||||||||||| || | |||||||||||||||||||||| | |||| Sbjct 814 GATAAAGAATCCCTCAAATTGGGGTATCGGCATCCCTCAAAACAGGGGGACACCATAGAC 873 Query 31686 ACTATTACAAAAGAAAAAA 31704 | |||||| ||||| |||| Sbjct 874 ATTATTACCAAAGACAAAA 892 >seq81489 Length=1574 Score = 86.0 bits (94), Expect = 2e-12 Identities = 156/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 24666 ACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGTTCAAGGCC 24725 |||||| | | |||| ||||| ||| | | || | |||| ||||||||||||||| Sbjct 619 ACCACCCAACAGGAACTTCATAAAAACTGCGCTTGTGTAAGGGCTTTTCAGTTCAAGGCC 560 Query 24726 GTTGCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTGCGCATATTTTCGTCGCGATA 24785 | || |||||||| | ||||| || ||||||||| || | ||||| || Sbjct 559 GCGTCCATCACTGCACATGCCATCAGGTGAGCAGGCGCACCGAAGCGAGTCGTCCTTGTA 500 Query 24786 GATGATCGGGGATTCAGTAACATTCACGCCGGAAGTGAATTCAAACAGGGTTC-TGGCGT 24844 || ||||| || | ||| || ||| | | |||||||||||||| |||| || | Sbjct 499 AATTATCGGCACATCCGAAACTTTAACGTCCGTTGTGAATTCAAACAGCGTTCGTGCTGA 440 Query 24845 CGTTCTCGTACTGTTTTCCCCAGGCCAGCGCCTTAGCATTAACTTC 24890 | | || | || ||| ||||| ||||| | ||| || ||||| || Sbjct 439 TGCT-TCATGCTCTTTCCCCCATGCCAGGGGCTTGGCGTTAACCTC 395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122520562980452