Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_027353.1 Length=167063 Score E Sequences producing significant alignments: (Bits) Value seq14905 156 5e-33 seq2788 122 9e-23 seq2551 91.5 2e-13 >seq14905 Length=119551 Score = 156 bits (172), Expect = 5e-33 Identities = 155/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 61408 TTACAAACTCTCGGTGAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGA 61467 ||||| |||| ||||| ||||||| ||| ||||| ||||||||||||| |||| || Sbjct 42459 TTACAGGCTCTGAGTGAAAGTACGAGTGATCACGTCCTGCTGCTGTTCCGGCGTCAACGA 42400 Query 61468 GTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 61527 |||||| || || || || || || |||||||| |||| ||| ||||| || || ||||| Sbjct 42399 GTTAAAACGCACGGCGTACCCCGAGACACGGATAGTCAACTGAGGATACTTCTCAGGATG 42340 Query 61528 CTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACC 61587 || | |||||||| || || |||||||||| ||||||||||| || || || || || Sbjct 42339 TTTTATCGCATCTTCGAGCGTCTCACGACGCATGACGTTAACGTTAAGATGCTGCCCCCC 42280 Query 61588 TTCAATTTTAACTGTAGGCTG 61608 ||| | ||| || ||||| Sbjct 42279 TTCTACGCGAACCGTTGGCTG 42259 >seq2788 Length=136445 Score = 122 bits (134), Expect = 9e-23 Identities = 286/432 (66%), Gaps = 0/432 (0%) Strand=Plus/Plus Query 140652 CTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTTTTCAA 140711 ||| || || || ||||| ||||||| |||||| |||| || || ||| ||||||| Sbjct 19279 CTGCACGCCGTAGTCCATGTGACGAACGCGGTTGCCTTCAACACCACGGTTGTTTTTCAG 19338 Query 140712 AACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCC 140771 ||| || || |||||||||||| ||||| || || || | || ||||| ||||| Sbjct 19339 AACCAGCAGGCTTTCAACTTCCAGGTGCCACATCGGGTAGAACAGGGTCGCAGCACCGCC 19398 Query 140772 ACGAATTCCACCCTGTGAGCATGATTTAACAGCAGTCTGAAAATGTTTCCAAAAAGGAAT 140831 || | || ||||| ||||| |||||||| || ||||| || || || | || || || Sbjct 19399 GCGCACGCCGCCCTGAGAGCAGGATTTAACCGCCGTCTGGAAGTGCTTATAGAACGGGAT 19458 Query 140832 AACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTCGGCACGAATCATACC 140891 | || |||||| | ||||||| || |||| ||| ||||| || || Sbjct 19459 ACAGCCGGTATGGAATGCTTCACCGCCGCGAATCGGGCTACCCAGCGCACGGATGCGGCC 19518 Query 140892 AACGTTAATACCAATTCCAGCACGTTTGGAGATATATTCAACAATTGAAGCGGAAGCCTT 140951 | |||| || || || || || || | || | |||| || || | ||| | | Sbjct 19519 AGCGTTGATGCCGATACCTGCGCGCTGTGAAACGTATTTCACGATGGCGCTGGAGGTCGC 19578 Query 140952 ATTGATAGACTTTAATGAATCACCTGCCTCAATAACAACACATGAACTAAACTGTCGAGT 141011 ||||| || | | || || ||| || | || || || || ||||| ||||| Sbjct 19579 GTTGATGGAGTCCAGGCTGTCGCCGCACTCGATCAGTACGCAAGAGCTGAACTGGCGAGT 19638 Query 141012 CGGAGTACGACAACCAGCCATAATAGGAGTTGGTAATGAAATCTGTCGAGTAGATACTGC 141071 ||| || || || | |||||| || || || | ||||||| || || || || Sbjct 19639 CGGGGTGCGCACGCCGGACATAATTGGCGTAGGCAGAGAAATCTTGAAGGTTGAAACCGC 19698 Query 141072 TTCATAAAAACG 141083 ||||| ||||| Sbjct 19699 ATCATAGAAACG 19710 >seq2551 Length=53185 Score = 91.5 bits (100), Expect = 2e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 61421 GTGAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 61480 || |||||||| | || ||||| |||||||||| || || ||||| ||||| || Sbjct 37103 GTAAAGGTACGGGTAATCACGTCCTGCTGCTGTTCTTTGGTTAGTGAGTTGAAGCGTACC 37044 Query 61481 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 61540 ||||| || || || ||||| |||||||| || |||| || |||| | | || || Sbjct 37043 GCATAGCCTGAAACGCGGATAGTCAGCTGAGGGAATTTCTCAGGATTTTCCATGGCCTCC 36984 Query 61541 TCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAAT 61593 ||| | || || || |||||||||||||| || ||||| ||||| || Sbjct 36983 AGCAGCATCTCGCGGTTCATTACGTTAACGTTCAGATGCTGACCGCCTTCGAT 36931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 533544644797680