Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_027383.1 Length=44613 Score E Sequences producing significant alignments: (Bits) Value seq139038 277 5e-70 >seq139038 Length=11747 Score = 277 bits (306), Expect = 5e-70 Identities = 868/1309 (66%), Gaps = 49/1309 (4%) Strand=Plus/Plus Query 1367 GCGACAATGGGGTCTGGTAAAACTGGCGCAACCATGTGGGCGCTGAATAAAATGTTCCAG 1426 || || ||||| ||| ||||| ||||| || |||||||||| || | |||||| || Sbjct 9555 GCCACGATGGGTAGTGGCAAAACCGGCGCCACACTGTGGGCGCTAAACCAGATGTTCAAG 9614 Query 1427 ACCGGCATCCT-GTCCAACCAGGAGGACCGCGTACTGGTGCTGGCCCCTCTGCGCGTTGC 1485 | |||| || | | ||| | || ||||| || ||||| || || ||||||||||| Sbjct 9615 AGCGGCGAACTCGGGC--CCA--AAGATCGCGTCCTTGTGCTCGCGCCGCTGCGCGTTGC 9670 Query 1486 ATCCGGCACATGGCCCCCGGAACAGGAAAAATGGCGTTTCCCCGCCCTGCTGGTAGTAGA 1545 |||| || |||||| || || || |||||| | || ||||| |||| || || || Sbjct 9671 GTCCGCGACGTGGCCCGGAGAGCAAGACAAATGGGGGTTTCCCGCACTGCAAGTCGTCGA 9730 Query 1546 CGGCACCGGGTCAG-AGAAGGACCGCATCGCTGCGCTTGAGAGTGACGCTAACGTGGTTT 1604 |||||||||| ||| || | ||| | | || | || | | ||||||||| | Sbjct 9731 CGGCACCGGGCCAGTAGCCTATCGGCAACAA-GTACTCGCCGGTAAGGATAACGTGGTGT 9789 Query 1605 GTATTAACTATGATGTAGTTGAGTGGCTCGTCGAGTATTGCGGCGACGAATGGCCCTTCA 1664 || |||||| ||| | | || ||| | || | || || ||||| |||||||| | Sbjct 9790 GTTGTAACTACGATATCGCAGAATGGTTGGTGCAATACCTTGGTGACGATTGGCCCTTTA 9849 Query 1665 CGGTAGTTGTTGCCGATGAATCCACTAAGCTGAAAGGCTATCGAA-GCAAGCAGGGAAGT 1723 | || || |||||||| ||||| || ||||| || | |||| || | ||| | Sbjct 9850 CCGTTGTCGTTGCCGACGAATCGACAAAGCTTAAGTCGTTCCGAACGCGTGGCGGGTC-T 9908 Query 1724 AAGCGCGCCCGTGCGCTGGCGGCGATCGCACATAAGCA------CGTCAAGCGCTGG-AT 1776 || ||||||||||| || | ||||| |||||| | |||||| | || || Sbjct 9909 AAACGCGCCCGTGCTCTTGGCAAAATCGCCCATAAGAAAAAAGGCGTCAAAGTCCGGTAT 9968 Query 1777 T-----AACCTGACCGGCACACCCGCACCAAACGGGCTGAAAGACCTATGGGGTCAGACG 1831 | ||| | || || || ||||| |||||||||| || || || |||||||||| Sbjct 9969 TGGTGGAACTTAACGGGTACGCCCGCTACAAACGGGCTCAAGGATCTTTGGGGTCAGAAC 10028 Query 1832 TGGTTTGTCGACGGTGGCGAACGCCTCGGTAGTAGCTATAAG-GCATTCACGGATCGCTG 1890 |||||| | || | ||||| || || || | | || | | || |||| || || | Sbjct 10029 TGGTTTATAGATGCTGGCGCGCGTCTGGGCAC-ATCTTTCACCGCGTTCAAAGACCGGTA 10087 Query 1891 GTTTATTAGCAAGCCTGTTAAGCCTGGCAGCTTTACTATGCAGCACGCCCCGCTTAAGAA 1950 || | |||| ||||| | |||| | || || | | || | || | Sbjct 10088 TTTCACCTCGAAGCAAA--AAGCC-GACAGCA--AATACGCCGTAGACCTCA--TACCCA 10140 Query 1951 CTCCGAGAA-AGAA-ATC-CA-ACAACGCC---TGTCCGACGTGTCGTTAACAGTTGACG 2003 |||||| |||| | | || ||| || || ||||| | ||| | || || |||| Sbjct 10141 TGCCGAGATCAGAACAGCGCATACATCGTGCATTGGCCGACATCTCGCTGACGGTAGACG 10200 Query 2004 CGGCTGAATACTTCGGGTGTGACAAGCCAATCTATACG-CCGGTTGTAGTGGACCTGCCG 2062 || || |||||||||| ||||| || | || | || ||| | || ||||||| Sbjct 10201 CGTCTAAATACTTCGGTTGTGAAGAGGCGAT-TGTAGTTCCGCGTCCGGTCTACCTGCCC 10259 Query 2063 AAGAAAGCCCGCAAGATTTATGACCAGTTCG--AAGCGGAGCTATTTGCGGAACTGGAA- 2119 ||||| | || | |||||| | | | |||| | || || || || || Sbjct 10260 CGTAAAGCGCAAAAAGTCTATGACGATATGGTGAAGCTG--CTGAAGGCCGATCTCGATG 10317 Query 2120 AGCGGAACTGTGGAGGCGGCGAACGCTGCGTCGAAGACTATTAAGTGCCTTCAGCTTGCT 2179 || |||| || || || | || || ||| | ||||| ||| ||| | ||| | ||| Sbjct 10318 AGGGGAAA-GTCGACGCCGTTAATGCGGCGGCCAAGACGGCTAAATGCTTGCAGATAGCT 10376 Query 2180 TCGGGGGCCGTGTATAAAGTCGACGAAGACGGCGAGCGCACCGACGAATGGGTGAAAATT 2239 || || ||||| ||| ||||| ||||| |||| || | || |||| | ||| Sbjct 10377 TCCGGTGCCGTTTATGTGACCGACGCCGACGGTGAGCCGACAGGTGACTGGGAGCTTATT 10436 Query 2240 CACGACGCTAAACTGGACGCTCTGGAAAGTATCGTGGAGGAGTTGAACGGCGCACCGTTG 2299 || ||| || |||||||| || || ||| || ||| | ||||| || || || Sbjct 10437 CATAACGAGAAGCTGGACGCGCTCGAGTCTATTTATGAAGAGCTCAACGGTGCGCCACTG 10496 Query 2300 CTCGTCGCGTACCAGTACAAGCATGACCTGGCGCGTCTCAAGAAGAAATTTCCGCACGGC 2359 | || || || | || ||||||| || || || ||||||||| || | | | Sbjct 10497 TTAGTGGCCTATTACTATCGCCATGACCGGGAACGCATCCTGAAGAAATTCCCCGAGGCC 10556 Query 2360 GTTGCGTTGGGCAAGGGTAAGCAGGGCAATAAGGA-TATGGAAGCGTGGAACAGAGGCGA 2418 || || ||||||| ||||| | |||| | | ||| || ||||||| ||| | Sbjct 10557 GTGGCACTGGGCAAAGGTAAA-ACCGCAACCCGCAATATCGAGCTGTGGAACCAAGGGAA 10615 Query 2419 GATCCCCATCATGTTTGCGCACCCGGC-ATCGGCGGGCCACGGCCTTAACCTGCAGGACG 2477 |||||| || | || || |||||||| | || ||||| ||||||||||| |||| |||| Sbjct 10616 GATCCCTATGCTATTGGCTCACCCGGCCAGCGCCGGGC-ACGGCCTTAACTTGCAAGACG 10674 Query 2478 GCGGACACCACCTTGCTATCTTCTCAGACACCTGGAACTTTGAGCACTTTTCACAGATCG 2537 |||||||||| || || | || || || |||||||| || ||| ||| ||||||| Sbjct 10675 GCGGACACCATCTGGCCGTTTTTAGTGATACGTGGAACTTGGAATACTATTCGCAGATCG 10734 Query 2538 TCGAACGTATTGGGCCTGTTCGCCAGATGCAAGCCGGACACCCTCGTCCGGTATTCGTCT 2597 ||||||| || ||||| || || || || || || || || || || || || || | Sbjct 10735 TCGAACGAATAGGGCCAGTGCGACAACATCAGGCGGGCCATCCACGGCCAGTTTTTGTGT 10794 Query 2598 ACATTATCCAGGCGCGTGGCACACTGGATGAACTGGTCGCGGAGCGTCG 2646 | | || ||||| || || || || ||| | ||||||||||| || Sbjct 10795 TCTTGATACAGGCTGCCGGTACGCTCGACGAAGTCGTCGCGGAGCGCCG 10843 Score = 219 bits (242), Expect = 1e-52 Identities = 503/747 (67%), Gaps = 14/747 (2%) Strand=Plus/Plus Query 36729 ACCTTGCACTTGAGCAGGACGAAGCCACGCGGCGCTTGCTTGATGCCGTTACGTGATTTT 36788 || || || || |||| | |||||| | |||| |||||| | ||||||||| |||||| Sbjct 531 ACTTTACATTTTCGCAGCAGGAAGCCCCTTGGCGATTGCTTCACGCCGTTACGGGATTTT 590 Query 36789 TCGTGGTACAGGTTAAGTTGTCCCGGCTGGTTGTCG-TCCGGCTGTTCCAGGAAGAAAGC 36847 ||||| || || || | || ||| || || | | || ||||| || | || || || Sbjct 591 TCGTGATAAAGATTGATTTTACCCAT-TGATTCTGGATCAGGCTGCTCGATAAAAAAGGC 649 Query 36848 GGAATCGACAGCGCCATGAAGCGCACCGGACCCGCGCGGGGATC-TGCTGCCGTTTGCAC 36906 ||||| || || ||||| ||||| ||||| ||||||| || | || || | | | Sbjct 650 CGAATCCACTGCACCATGCAGCGCGCCGGAACCGCGCGCAGAGCGTGACGC-GCCACCCC 708 Query 36907 CCTTCGCCGGGTGGTGGATGACGCCCGCACTGCCACCTGTATTTTCCGCAATGGCTTTCA 36966 | || |||||||| || | |||||| || || || || | || |||||| Sbjct 709 CTTTTGCCGGGTGATGAACGACGCCAGCCGATCCGCCGGTTGCGATAGAGATCTCTTTCA 768 Query 36967 GCGCTTTGACCACTTCACCCATATCGCTGGCGTTGTTCTCGTCAAACGGTTTAGCCTCGG 37026 | || |||||||| |||||||| ||| | ||||| || ||||| | |||| Sbjct 769 GGGCGCGTACCACTTCCCCCATATCTGCCGCGCTATTCTCATCGAACGGCCGAAGGTCGG 828 Query 37027 CGGACCGCAGCGCAACAGTCTGGTTGAGTGAGTCGAACGCCACCAGGCCAACCGGTTCGC 37086 || || | || | ||||||||| || |||||||| || | || |||||| || || Sbjct 829 AAGAGCGTAAAGCCATAGTCTGGTTTAGAGAGTCGAAGGCTATCATGCCAACAGGATCTT 888 Query 37087 C----GTTAGCGGTGCGGTTGATAAAGCTGATAACTTCGCGCAAGCCTGATTTGCTGGTG 37142 | | || || ||||| || || | | || |||| ||| | || | | | Sbjct 889 CACGGGCTATCG-TGCGGATGT---AGTCGGTCACCCGGCGCTTGCCGGTCTTTGTTGAG 944 Query 37143 ATATCCCAGCCGCGTGACTGCAGGTCTATAATGTGCAGCTTGTCCAGGTCGTGCTCATAT 37202 || |||||||| | | ||||| | ||||||||| | ||||| | | ||| Sbjct 945 ATGTCCCAGCCCAATACCGAGAGGTCGACTATGTGCAGCCAATTGAGGTCATCTTGATAC 1004 Query 37203 TTAATCTGCAATGCTTCTTTACGCTGGTTGGAGGCTTCGCCACCTTCCGCGTCGAAATAG 37262 || ||||| | || | ||| | || || ||||||||||| || |||| |||| Sbjct 1005 TTTATCTGGAGCGCCTGTTTCCTTAAGTGAGAACTCTCGCCACCTTCGGCATCGAGATAG 1064 Query 37263 AAGCAATGAGACTGGACGACCTTC-GCACCGCCGAACGGAATACCCGCGGCAACCGCACC 37321 ||||||||||| | || |||||| || ||| | || || || || ||||| || || | Sbjct 1065 AAGCAATGAGATTTGATAACCTTCTGCCCCG-CAAAAGGTATGCCAGCGGCGACAGCGGC 1123 Query 37322 CATCTGCCCCAGCACATAGAATGACTTGCCTATGTTCGACTCACCCGCCATGTACCAGGT 37381 ||| ||| || || |||| || ||||||||||| || || |||||| |||||| || Sbjct 1124 CATAGCCCCAAGGACGAAGAACGATTTGCCTATGTTTGATTCGCCCGCCGCGTACCACGT 1183 Query 37382 CGATTTGAAGTTAATCAGACCTTCGATGATCGGGTCGTGCTTACTGAATAGTGCGACCGG 37441 |||| |||||| | | || || |||||||| ||| |||| |||| | || ||| Sbjct 1184 CGATCGGAAGTTTAAAAACCCATCAATGATCGGCACGTTCTTAGTGAACAAGGCAGACGG 1243 Query 37442 CTCGTTATCCAGGTCCGCATCGGTGCA 37468 || || || || || |||||||| Sbjct 1244 TTCATTCATCAAATCGGCGTCGGTGCA 1270 Score = 206 bits (228), Expect = 8e-49 Identities = 493/741 (67%), Gaps = 16/741 (2%) Strand=Plus/Plus Query 43168 GACACCATGATTATGGCCTTTCGACACGCGCTGCCGGGTGGCCTCGATATGCAGTGCCAG 43227 ||||| ||| | ||||| ||| ||||| |||||||| ||||| | | ||| | Sbjct 7014 GACACAATGGTCGAGGCCTACCGATACGCGTTGCCGGGTTCGCTCGAGAAACTCTGCGAA 7073 Query 43228 GTGTTGGGCGTTGACGCAGAGCACGCGAAGGATAAGGCGGGCAAGGCGCTGATCAAACGA 43287 ||| | |||| || |||| ||| || ||||||||||| |||||| ||||| | || Sbjct 7074 GTGCTAAACGTTCCCGTGGAGCTCGCCAAAGATAAGGCGGGTAAGGCGTTGATCCAGCGC 7133 Query 43288 TTCTGTAAGCCAACCCCTAAGACCTACAAAATCCGCCGCTACACGCGCGAGACGCACCCC 43347 |||||||| || || ||||||| ||||| || || |||||||| ||||||||||| Sbjct 7134 TTCTGTAAACCCACGCCTAAGAATTACAAGATACGGCGCTACACAAAGCAGACGCACCCC 7193 Query 43348 GAGGAGTGGGCTAAA---TTCCTGCGCTATGCCGCGTTGGATATCATCGCTATGAGGGAA 43404 || || ||| ||| || | ||| || | ||||||| ||||| | || Sbjct 7194 GAAGAATGG---AAACGCTTTGTAGACTACGCACGGCGCGATATCACTTCTATGCGTGAG 7250 Query 43405 GTCTATTGGCGCATACCGGACTGGGGTAACACGCCGAAGGAAGACGAAATCCTGCTTATC 43464 | || | || | || ||| |||| || ||| || ||| | | | Sbjct 7251 GCCTTCTACCGACTGCCAACATGGAACTCCACGGAGATTGAAAACCGGATCTTAGTGCTT 7310 Query 43465 GACCAGTTGATCAATGACCGCGGCTTCTATGTGGACGTTGACCTGGCGCGCGCTGCGATC 43524 |||||| | || |||||||| || || || || || || || || || ||| | Sbjct 7311 GACCAGATCATTAATGACCGAGGGTTTTACGTCGATACCGAGCTTGCTCGTTGCGCGGTA 7370 Query 43525 AAAGCGGTACAGGCGCATAAAGAAGAATTGAAGGAAGAAGCCTGGGAGCGCTTCGGCGGT 43584 | || |||||| |||||| ||||| | || | || || || | |||| | Sbjct 7371 CAGGCCATACAGGAGCATAAGAAAGAACTTAAAGCCGAGGCTATGGCCAAATACGGC--T 7428 Query 43585 AAG--CTGACAGGCAATGACTTCCTGCCAGCGCTGCGGGACCTCGCGCCTGCGTTCACAA 43642 || || || || || |||||||| || |||| | || || || ||| ||| Sbjct 7429 CAGGTCTTACCGGTGCGGATTTCCTGCCGGCATTGCGCGGTCTAGCCCCGGCGCACACCG 7488 Query 43643 TCCACAACGCGCAGAAATC---CACGCTTAACGACCTGCTGGAAGATCCAGACTTCCCCG 43699 | | || || ||||| | | ||| |||||||| ||||||||||| |||| | Sbjct 7489 TACCGAATGCCCAGAAGGCGGTCTTGCTG---GACCTGCTAGAAGATCCAGATCTCCCAG 7545 Query 43700 AAGAGGGCAAAGTGCTTATCGAGATGCGCCTCGGTGCGTCATCCACGGCATCGACTAAGT 43759 | || | | || | || || ||||||||||| || | || ||||||||||| || | Sbjct 7546 ACGAAGCCCGCGTTATCATTGAAATGCGCCTCGGCGCAGCGTCAACGGCATCGACAAAAT 7605 Query 43760 ACAATCCGCTCGTTAATGGCCTATCCGCCGATGGTCGCCGCCGTGGGTGTCTTCAGTATG 43819 |||| || || | | || || |||||||| || || ||||| || |||||||| |||| Sbjct 7606 ACAAGCCACTTATCGAGGGTCTGTCCGCCGACGGCCGGCGCCGGGGTTGTCTTCAATATG 7665 Query 43820 GTGGGGCAAAGCGCACGCTACGCTGGGCCGGTAAAGGCTTCCAGCCGCAAAACCTGGCGC 43879 |||| || ||||| || ||| | ||||| || |||||| || ||||| || || || | Sbjct 7666 GTGGCGCCAAGCGAACCCTAAGATGGGCTGGGCGAGGCTTTCAACCGCAGAATCTTGCAC 7725 Query 43880 GTGGCGAGTATAGCGACGACC 43900 |||| | || |||||||| Sbjct 7726 GTGGGTATTACCACGACGACC 7746 Score = 102 bits (112), Expect = 2e-17 Identities = 258/385 (67%), Gaps = 13/385 (3%) Strand=Plus/Plus Query 42049 AAGTGGATGGACCGCCACTACGCCCAGGATTCTAAGGAATGCGCAGTCCGCGACGGTGAC 42108 || ||| | |||||||| |||| ||||| ||||| || ||| || |||||||||||| Sbjct 5307 AAATGGTTTGACCGCCATTACGGACAGGACTCTAAAGAGTGCTGTGTGCGCGACGGTGAC 5366 Query 42109 GAGCGTGACGAAGTAACCGAAGAATTTGAAGGCATGTTGTACATCAACGCCAAATCGTTC 42168 |||| || ||| || |||||||||| | ||| |||||| || || ||| Sbjct 5367 CAGCGCGAAGAACCAAGTCCTGAATTTGAAGACGCTTTGATCATCAATGCTAAGCGCTTC 5426 Query 42169 AAACAGCCGAACATTCAAACGTCACTCGGCGAGAAGCAGACGGAACAAGGTCTGACTGTA 42228 || ||||||| || ||| ||| ||||| ||||||| ||| || |||||| | Sbjct 5427 AAGCAGCCGAGGATCTTAACTTCAACGGGCGAAGAGCAGACCGAATCTGGCCTGACTATC 5486 Query 42229 GAAGGCGACGAGATCGAAGGCCAGGAGATCTACTCCGGTTGCTATTGC-AATGTGTCCCT 42287 || || ||||||||||| | || | || ||| ||| || || || || || | Sbjct 5487 GACAATGATGAGATCGAAGGTGACGAAGTTTATAGCGGCTGC-ATGGCGAACGTCTCTGT 5545 Query 42288 GGATATTTGGGCGTGGAACAATACCAACGGCAAGGGACTCGG-TGCTGGCCTTTTGGGTC 42346 | ||||| ||| | || |||||||| || || || ||| | ||| | || Sbjct 5546 AAGCTTCTGGGCATGGGATAACGAGAACGGCAAAGGCCTTGGCTGC-GAACTTCTCGGCG 5604 Query 42347 TGCGCTTCCGTGATGACGGCGAAGCCTTCGGCGGTGGCGGTTCT-----TCTTGC-TCCG 42400 | || |||||||| || | || || ||| ||||||||| | ||| || Sbjct 5605 TCCGTTTCCGTGAAGATGCGCCTGCGTTTGGC---GGCGGTTCTACGGAGCATGCGAACG 5661 Query 42401 ACGAAGACCTGGGCGACGATGACGA 42425 |||| ||||| ||||||||||| || Sbjct 5662 ACGATGACCTCGGCGACGATGAGGA 5686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142404476932900