Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq74419 127 2e-24 seq101742 98.7 8e-16 >seq74419 Length=1556 Score = 127 bits (140), Expect = 2e-24 Identities = 266/392 (68%), Gaps = 16/392 (4%) Strand=Plus/Minus Query 19548 TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC------ 19601 |||||| || ||||| | |||||| | || || ||||| || | | ||||| Sbjct 729 TTTGCATATAATAATCTTCGATGAAATCGATGCCATCTGCAAAGCACGTGGTTCCGTAGC 670 Query 19602 TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGT 19661 |||| | ||| || || || || || || |||||||| || | ||| | || ||||| Sbjct 669 TGGTAATAGTGGTGTTCACGATACAGTGGTTAATCAACTACTAGCTAAAATCGATGGTGT 610 Query 19662 TAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAG 19721 | ||| |||| || ||| | |||||||||||||| ||||||| || | || || Sbjct 609 AGAACAATTGAACAACATTCTGGTTATTGGCATGACAAATAGACGTGATATGATTGATGA 550 Query 19722 CGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATG 19781 || ||| | |||||||||| |||||| | | || || |||| || || ||||| Sbjct 549 AGCTTTAATGAGACCCGGTCGCTTGGAAGTGCAAATGGAGATTAGTTTGCCAAATGAAGA 490 Query 19782 TGGACGTGTGGAAATTTTAAACATACATACATCAACC--ATGC--GAC-AAAATAACCTT 19836 ||||| ||| |||||||||| || | ||| ||| | |||| ||| | ||||| || Sbjct 489 GGGACGCGTGCAAATTTTAAATATCC--ACACCAAACGTATGCGTGACTATAATAAGATT 432 Query 19837 TTAAATGACGATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCA 19896 | ||||| ||| |||| ||||| || || || |||| ||| || || Sbjct 431 ---GCTCCTGATGTGGATAACAAAGAGATTGCCGCATTGACAAAGAACTTTAGTGGTGCT 375 Query 19897 GAACTTGAGGGATTAGTGAGGGCCGCCCAATC 19928 ||| | ||||| ||||| | || || ||||| Sbjct 374 GAAATAGAGGGTTTAGTACGCGCAGCACAATC 343 >seq101742 Length=1472 Score = 98.7 bits (108), Expect = 8e-16 Identities = 180/262 (69%), Gaps = 4/262 (2%) Strand=Plus/Minus Query 41049 ATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCA 41108 |||||||| ||||| ||||||| | || |||| |||| || || || || || Sbjct 260 ATGGCATTACCACCGTGTCATTGTCTGGCGCAATTTTTCGTTGCTAACGGAGAGCTATCT 201 Query 41109 TGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGT 41168 ||||||||||| ||| | | || |||||| | || || || || || || || Sbjct 200 TGTCAATTGTACCAACGTAGTGCAGATATGGGATTGGGTGTGCCATTCAATATTGCTTCC 141 Query 41169 TATGCTCTGCTCACGTATATGATTGCACACGTTAC--CAATTTAAAACCTGGTGAATTTG 41226 || || |||||||| || ||||| ||||| | || | ||| ||||| || |||| Sbjct 140 TACGCCCTGCTCACTTACATGATCGCACATATAACTGGACTTT--GTCCTGGAGACTTTG 83 Query 41227 TTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCGTTAACAGAACAAC 41286 ||||||| ||||| ||| ||| | || | | |||||| || || || | ||||| Sbjct 82 TTCACACCTTAGGTGATACTCATGTCTATAAAAGTCACATTGAACCATTGAAGGAACAGT 23 Query 41287 TGACACGAAAACCTAGACCATT 41308 | |||||||| || | ||||| Sbjct 22 TAACACGAAAGCCACGCCCATT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396782461871230