Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq43985 224 8e-54 seq119770 113 4e-20 seq21876 111 1e-19 seq138766 86.0 5e-12 >seq43985 Length=4878 Score = 224 bits (248), Expect = 8e-54 Identities = 585/879 (67%), Gaps = 35/879 (4%) Strand=Plus/Minus Query 130906 TTTTCGCTT-CAATTCATCCCAATCCCATAGAGAGGTAGGTTTGACATTGTTCCACATAT 130964 ||||| ||| |||| || ||||||||| || || ||||| || | |||||||| Sbjct 2222 TTTTCTCTTTCAATACAGACCAATCCCAGAGGTCAGTTGGTTTT---TTATCCCACATAT 2166 Query 130965 CAAATTGTAGTATGCCTTTACTGGCGGGACTGGATTCGAACGATTCGTAGATTCCTTCGA 131024 || |||| ||||| ||||| ||| | || | ||| | | ||| || | || | Sbjct 2165 CATATTGAAGTATTCCTTTGCTGACTGGTGAGCCTTCATAAGTTTCATAAGTACCATATT 2106 Query 131025 CACGAGCCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTT 131084 ||||| || ||||||||| || || || || || || ||||| |||||||| Sbjct 2105 TTTCAGCCAATTCACAGCTAGCTTCTAATGCGCCATAGTACATAGTTTCAAAAATTTGTT 2046 Query 131085 TATTTAATTGTTTCGCTTGGTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTG 131144 |||||| | || || | ||||||||| || | ||| | || |||||||||| Sbjct 2045 GATTTAAGAGCGCAGCCTGCTCGCTCTCGTATGGGTAACGCATAAGGATTAAAGCGTCTG 1986 Query 131145 CGAGACCCTGTATCCCAACGCCCACCGGTCTATGTTTTAAATTACATTTA-----CGCGA 131199 | | ||| ||||| |||| ||| | || | |||| | |||||| | || | || Sbjct 1985 CAAAACCTTGTATGCCAATGCCAATAGGGCGATGTCTGAAATTAGACTTCTTTGCCTCGG 1926 Query 131200 ACATTCGGTGGGATAAAGGTTAATGTCAATTATTTTGTTTAAATTGCGCACTACAATTTG 131259 || | |||||| | || ||||| || ||||| |||| ||| || |||| | Sbjct 1925 GCAAT-----GGATAATGATTTATGTCGATGATTTTATTTAGATTACGTGTTACAGTCAT 1871 Query 131260 TGTGACGCTTTTCAATTTGTCGAAATCAAACGTGCCAGTTTCGAGGTTTACAAATTGATT 131319 ||| || ||||| | ||||| |||| |||| | | ||||| ||| Sbjct 1870 TGTAACCTCCTTCAAACGCTTAAAATCGTACGTTT---TTTCTGGTGTAACAAACATATT 1814 Query 131320 TACACATATTGACGCCAGATTACAAACTGCCGTTTCGTCATAATCGCAATACTGAACAAT 131379 | || || || | ||||||||| ||| ||| || | |||||| ||| || Sbjct 1813 GAGTGCAATCGATGCTAAATTACAAACAGCCACTTCATCTGGTGCTGAATACTCAACTAT 1754 Query 131380 TTCGGCGCACAAATTACTGCTCTTTATGGTGCCCAAATTTTGTTGATTGCTTTTAGCATT 131439 ||| | || |||||||| | || || ||||| | |||||||||||| || || ||| Sbjct 1753 TTCTGTACATAAATTACTACATTTAATAGTGCCAATATTTTGTTGATTACTCTTTCTATT 1694 Query 131440 CACATG-GTCCTTGTACATCATGTAGGGCGTGCCCGTTTCGACTTGAGTTTCAATAATG- 131497 ||||| |||||||||| ||| || || ||||| || || ||||| | |||||||||| Sbjct 1693 -ACATGCATCCTTGTACAGCATATATGGTGTGCCTGTCTCTACTTGCGATTCAATAATGG 1635 Query 131498 -TATCGAAAGAGTTTTCGAGCAGACAATTGATATTTGTATTGGC-CG--CGTTTT--TCG 131551 | | ||||| ||| | || || | || |||| || || ||| || || Sbjct 1634 CAAACCAAAGACTTT--GTGC-----TTTTACTTTCTTATTAGCGCGTCCGTCTTGCTCA 1582 Query 131552 TAATTTTCGTACAACGTTTCAAAGTTTTGGCCAAACGAACT-GTCCAAATTGGGACATTC 131610 || || || || ||||||| | | ||| | | || | ||| |||||| | Sbjct 1581 TATTTAGTATATAATTTTTCAAATTCATCGCCCCA-TACCTCATGCAAGCCGGGACACTT 1523 Query 131611 GCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGG 131670 | |||||||| |||||||| | | || |||||| || |||||||| | ||| || Sbjct 1522 GTGTGGACACATAAGCGACCAATCTTCATTAGCTTCAACACGTTTCATAAAAAGATCTGG 1463 Query 131671 CACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAttttttt 131730 | |||||| || || || | |||||||||| | | ||||||||| || || |||| || Sbjct 1462 AATCCATAATGCATAAAATAAATCTCTAGCTCTATGCTCTTCTGTGCCAGTATTTTTCTT 1403 Query 131731 CAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTC 131769 |||| ||||| || || || || |||||||| ||||| Sbjct 1402 TAAATCCAAAAATTCAAATATATCTGCATGCCATGGTTC 1364 >seq119770 Length=1537 Score = 113 bits (124), Expect = 4e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||||||||| || | || || ||||||||||||||||||||| | | || | Sbjct 878 CGCAATACCAGGTGAAGTGTTGATTCTTTTTGAATATTGTAGTCGGATAGAGTACGTCCA 937 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| | ||||| |||||| |||| ||||| |||||||| || || | ||| |||||| Sbjct 938 TCTTCTAATTGTTTTCCGGCGAAAATAAGACGTTGTTGATCTGGTGGAATACCTTCTTTA 997 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAACTTCTAGAGTTAT 27211 || ||||| ||| | |||| | ||||| | |||| || || |||| || || Sbjct 998 TCCTGAATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGC-TCCACCTCTAAGGTGAT 1056 Query 27212 AGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||||| || || ||||| || || |||||||| Sbjct 1057 GGTCTTGCCAGTTAGTGTTTTGACGAAAATTTGCAT 1092 >seq21876 Length=2391 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| |||||||| | ||| || || || ||||| ||||| ||| || | | || | Sbjct 726 CGCAGGACCAAATGAAGCGTTGATTCCTTCTGAATGTTGTAATCGGACAAGGTACGGCCA 667 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| | || || |||||| | || | |||||| ||||| || || | ||||| || Sbjct 666 TCTTCCAATTGCTTGCCGGCGAAGATTAAACGCTGCTGATCTGGGGGAATTCCCTCCTTG 607 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || |||||| || | | |||| | ||||| | | |||||||| || || ||| Sbjct 606 TCCTGGATCTTAGCCTTAACGTTTTCGATGGTGTCAGACGGCTCAACTTCCAGGGTGATA 547 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | ||||| |||| |||||| || |||||||||||| Sbjct 546 GTCTTGCCAGTCAAAGTTTTTACGAAGATTTGCATA 511 Score = 86.0 bits (94), Expect = 5e-12 Identities = 116/159 (73%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 27091 CGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTT 27150 |||| || || || || || ||| | || | ||| |||||||| || || | ||| || | Sbjct 896 CGTCCTCCAGTTGCTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGGAATACCTTCCT 837 Query 27151 TATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAACTTCTAGAGTT 27209 | || ||||| ||| | | | || | |||||| | ||||| | ||||||| ||| Sbjct 836 TGTCCTGAATCTTAGCTTTGACGTTCTCAATAGTGTCGGATGGCT-CGACTTCTAAAGTG 778 Query 27210 ATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 |||| ||| || |||| |||||| || |||||||||||| Sbjct 777 ATAGTTTTCCCTGTCAAAGTTTTTACGAAGATTTGCATA 739 >seq138766 Length=1258 Score = 86.0 bits (94), Expect = 5e-12 Identities = 163/235 (69%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 27015 TTATTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAG 27074 || || ||||| || | || || || | ||| | ||||| ||||| || |||||||| Sbjct 872 TTCTTACCTCCACGAAGCCTCAGAACAAGATGGATTGTAGACTCTTTCTGTATATTGTAA 813 Query 27075 TCGCTCA-TGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATC 27133 ||| | |||| | | || || ||||| ||||| || | || || | ||| ||||| Sbjct 812 TCGGAAAGTGTTCTTC-CATCCTCAAGCTGCTTACCAGCAAAGATCAGTCTCTGCTGATC 754 Query 27134 CGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGG 27192 || || | ||||||||||| || ||| || | | || ||| | || | ||| Sbjct 753 TGGTGGAATCCCCTCTTTATCCTGTATTTTGGCCTTGACATTCTCAACATTTTCGGATGG 694 Query 27193 CTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || | || ||||| | ||| ||||| || ||||| || ||||||||||| Sbjct 693 CTCCACCTCC-AGTGTTATTGTTTTTCCCGTTAGTGTTTTTACGAAGATTTGCAT 640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424214296339152