Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_027984.1 Length=57677 Score E Sequences producing significant alignments: (Bits) Value seq43481 221 4e-53 seq54952 116 1e-21 seq6040 109 2e-19 >seq43481 Length=83004 Score = 221 bits (244), Expect = 4e-53 Identities = 223/290 (77%), Gaps = 0/290 (0%) Strand=Plus/Plus Query 11419 GCTGAAGCCAAACAACATCAACGTTTAGAAATTTCGCAAGCGCATTCATTTTTTCCTGAC 11478 |||| ||||| || ||||| || ||||| || || ||| | ||| | | | Sbjct 68217 GCTGCAGCCAGACGGGGTCAACCTTGAGAAACTTGGCCAGCTCTGCCATGACGGCAGGGC 68276 Query 11479 GCGGTAAAGACTCAGCATTAAACCATTTGCTAACGCCTTTGGACGAAAGAGAAAGGGCAC 11538 |||| || || || || || ||||| ||||| |||||||| || || | | || | Sbjct 68277 GCGGCAACGATTCTGCGTTTAACCACTTGCTCACGCCTTTTGAAGACAAACCTGTCGCGC 68336 Query 11539 GGGCTATAGCCATTCCCCTACCATGTTCATCAAGACCAGCTTCTTTACAGGCTTGCGCTA 11598 ||| || || || || | |||||||||||||| ||||| ||||||||||| ||||| | Sbjct 68337 GGGATAAGGCTATCCCACGTCCATGTTCATCAAGCCCAGCGTCTTTACAGGCCTGCGCCA 68396 Query 11599 GCCGCTGGGCGAATTCTTTGCGCACTTTTTCATTCTGAACCATGAGTACGATACTAAAGC 11658 ||| ||| || ||||||| |||| ||||||| | |||||||||||||||||| |||| | Sbjct 68397 GCCTCTGAGCAAATTCTTCACGCAGTTTTTCAGTTTGAACCATGAGTACGATAGTAAACC 68456 Query 11659 ACTTGCAAAAACTTTCAGTTCAACCATAATACGTACTGAAAGTACGAAAA 11708 ||||||||||||||||||||||| |||||| |||||||||||||||||| Sbjct 68457 ACTTGCAAAAACTTTCAGTTCAATAATAATATGTACTGAAAGTACGAAAA 68506 >seq54952 Length=1307 Score = 116 bits (128), Expect = 1e-21 Identities = 96/117 (82%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 12548 ATGAGCATGAATCTTATGGCTAAGGCCATGAATATAAAGGTTGGCAACCCACTGAGAAAA 12607 |||||||||| || ||||| || || ||| |||||| |||||||| | ||| | ||| Sbjct 172 ATGAGCATGACCCTAATGGCAAAAGCTATGGGTATAAAAGTTGGCAATTCCCTGCGTAAA 231 Query 12608 CTGGTTCTGATTAAACTTGCCGATAACGCCAATGATAATGGCGAATGCTGGCCTTCA 12664 |||||||||| |||||||| |||||||||||||| || || || |||||||||||| Sbjct 232 TTGGTTCTGATCAAACTTGCTGATAACGCCAATGACAAAGGGGAGTGCTGGCCTTCA 288 >seq6040 Length=129903 Score = 109 bits (120), Expect = 2e-19 Identities = 95/114 (83%), Gaps = 3/114 (3%) Strand=Plus/Plus Query 21646 GGATTAGTTACGTACCGTTATTATCCTGCGCC-CGGCCCTTTAGCTCAGT-GGTGAGAGC 21703 ||| |||||| |||||| || ||||||| || |||||| |||||||||| ||| ||||| Sbjct 118243 GGAGTAGTTAACTACCGT-ATAATCCTGCACCGCGGCCCCTTAGCTCAGTTGGTTAGAGC 118301 Query 21704 GAGCGACTCATAATCGCCAGGTCGCTGGTTCAAATCCAGCAAGGGCCACCATAT 21757 ||||||||||||||| |||| ||||||||| ||||| | ||||||||| || Sbjct 118302 ACGCGACTCATAATCGCTTGGTCACTGGTTCAAGTCCAGTAGGGGCCACCAAAT 118355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 184140250049028