Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_027993.1 Length=43587 Score E Sequences producing significant alignments: (Bits) Value seq139038 181 3e-41 >seq139038 Length=11747 Score = 181 bits (200), Expect = 3e-41 Identities = 684/1066 (64%), Gaps = 49/1066 (5%) Strand=Plus/Minus Query 29203 CCGGCACGGAACGTATCAAGCGCGGTTTCTTCGCCAGCCAGCCACGCCAAACCGCGGCCT 29262 ||||||||||| || || ||| | | ||||| || || ||||| ||||| || || || Sbjct 7978 CCGGCACGGAATGTCTCGAGCACAGACTCTTCACCTGCAAGCCATGCCAACCCACGCCCC 7919 Query 29263 TCAACGTTCGAGTAGTCGGCGACGACAAACTTATGTCCGGCTTCCGGG---ATAATGCAG 29319 |||||||| | ||||||||| || || | ||| || ||||||| ||||| || Sbjct 7918 TCAACGTTAGCGTAGTCGGCAACAACCAGCTTCA-TC--GCTTCCGCTGCAATAATACAA 7862 Query 29320 CTGCGAACCGTAGATGCCGTTAGCTTGGCTACATCAAAACGGCGATGTGCTCGGCCCTTA 29379 || ||||| ||||||||||||||||| | ||| | | | | ||| || | Sbjct 7861 GATCGGACCGTCGATGCCGTTAGCTTGGCGATATCGTAGCAGTTCTCCGCTTTACCTCGA 7802 Query 29380 AGTAATGCTGAAAT--------AC-----------CTTTATCCAG-----TTCA---TCA 29412 |||| || ||| || ||| ||| ||| || Sbjct 7801 AGTAGTGACTCAATCGCGAGTGACAAGTCTTTTGACTTGGGCCAAGGCTTTTCTGGGTCG 7742 Query 29413 TCGTGATAGTACCCACGCGCCAGGTTCTGCGGCTGGAAGCCTTTACCCGCAAATCGTAAC 29472 ||||| || |||||||| || || |||||||| || |||||| || || ||| || Sbjct 7741 TCGTGGTAATACCCACGTGCAAGATTCTGCGGTTGAAAGCCTCGCCCAGCCCATCTTAGG 7682 Query 29473 GTACGTTTAGCTCCACCATACTGGATGCAACCGCGACGGCGGTCGTCAGACGAGCGGCCT 29532 || || || || |||||||| || | ||||| || || ||| |||| | || | || Sbjct 7681 GTTCGCTTGGCGCCACCATATTGAAGACAACCCCGGCGCCGGCCGTCGGCGGACAGACCC 7622 Query 29533 AACAGCAGCGGGTTATATTTCGTTGACGCAGTGGATGCCGCCCCGAGGCGCATTTCTATA 29592 | || || || ||||| || || || || || || || |||||||||||||| || Sbjct 7621 TCGATAAGTGGCTTGTATTTTGTCGATGCCGTTGACGCTGCGCCGAGGCGCATTTCAATG 7562 Query 29593 ATCGTGCGGGCGTCGTCCGGTAAATCATCGTCAGCAAGCAGGTCGTTAAGCGTAGAC--- 29649 || |||||| ||||| || | ||| || | |||||||| ||| |||| Sbjct 7561 ATAACGCGGGCTTCGTCTGGGAGATCTGGATCTTCTAGCAGGTCC---AGCA-AGACCGC 7506 Query 29650 -TTCTGCGCGTTGTGGATGCGATGCGCAGGTGCCAGTTCACGCAGAATCGGCAGGAAGTC 29708 ||||| || || | | | ||||| || || || | |||| ||||||||| || Sbjct 7505 CTTCTGGGCATTCGGTACGGTGTGCGCCGGGGCTAGACCGCGCAATGCCGGCAGGAAATC 7446 Query 29709 CTTACCTGTAAGCGAGCCGCCGTATTTACGTTGGGCTTCTTCCTGTAACTGTGCCTTGTG 29768 | ||| ||||| ||||||||| || || | | | | | ||| || Sbjct 7445 CGCACCGGTAAGACCTGAGCCGTATTTGGCCATAGCCTCGGCTTTAAGTTCTTTCTTATG 7386 Query 29769 TTTCTCCACAGCTTCAATTGCGGCTTCCGCCAGCGCAACGTCGACCTTAAACCCGCGGTC 29828 | || | || | | ||| || ||| | ||||| | |||||| ||||| Sbjct 7385 CTCCTGTATGGCCTGTACCGCGCAACGAGCAAGCTCGGTATCGACGTAAAACCCTCGGTC 7326 Query 29829 GTTAATTAACTGGTCCAGTTCCAGTACACGGTCTTCGAACTC---GGAGTTACCCCAACG 29885 ||||| | |||||| || | | | |||| ||| | ||| |||||| ||| Sbjct 7325 ATTAATGATCTGGTCAAGCACTAAGATCCGGTTTTCAATCTCCGTGGAGTT---CCATGT 7269 Query 29886 CGGCAACTTATGGAACACTTCACGCATCGCGGTGATGTCGCTAACGGCGTACTTGATGAA 29945 |||| | ||| | |||||||| | ||||| |||| ||||| | | || Sbjct 7268 TGGCAGTCGGTAGAAGGCCTCACGCATAGAAGTGATATCGCGCCGTGCGTAGTCTACAAA 7209 Query 29946 CAGCGCCCACTCATCCGGGTGCGTTTCAGCAGTGTAGCGGCGAATTTTGTAGTTCTTCGG 30005 | ||| || || |||||||| | |||||||| || || ||||| ||||| || Sbjct 7208 GCGTTTCCATTCTTCGGGGTGCGTCTGCTTTGTGTAGCGCCGTATCTTGTAATTCTTAGG 7149 Query 30006 CGTCGGTTTAGAGAAACGCTGAATAAGCGCTTTGCCTCGTTTGTCTTTCGCGTTGTCTGC 30065 ||| |||||| |||| ||||| || | ||| || || || ||||| ||| || | Sbjct 7148 CGTGGGTTTACAGAAGCGCTGGATCAACGCCTTACCCGCCTTATCTTTGGCGAGCTCCAC 7089 Query 30066 AGACACGCCAAGCACTTCGCACAATGCGTCGAGTGAACCCGGCAGCGCGTGACGAAACGC 30125 | ||| ||||||||||| | | ||||| |||||||||| ||||| || | || Sbjct 7088 GGGAACGTTTAGCACTTCGCAGAGTTTCTCGAGCGAACCCGGCAACGCGTATCGGTAGGC 7029 Query 30126 CCAAATCATCGTATCAATGGTGTTGCTTACG-GGAATATCAAAACCCCAGCAGTGCTTCA 30184 | | ||| || || ||| || |||| | || || | | |||||| |||| | || Sbjct 7028 CTCGACCATTGTGTCGATGATG-TGCTCGGGTGGGATCGCGATACCCCAACAGTTCGACA 6970 Query 30185 TGATGAGTCTGTCGAACATTGAGCCGTTGTGCCACACCATCTTAAT 30230 | |||||||||||||| || ||| || | ||||| ||| || Sbjct 6969 GCACAGGTCTGTCGAACATTAAGAAGTTTTGGCCCACCAACTTCAT 6924 Score = 141 bits (156), Expect = 3e-29 Identities = 766/1206 (64%), Gaps = 44/1206 (4%) Strand=Plus/Minus Query 25302 TGTCCTGCCTGTTTCTGGCGGACCGGGCCTATTCGCTCGACAACCTGCAAATAGTGCTCA 25361 || || ||||| | || || || || |||||||| ||||| | |||| |||||| || Sbjct 10774 TGGCCCGCCTGATGTTGTCGCACTGGCCCTATTCGTTCGACGATCTGCGAATAGTATTCC 10715 Query 25362 AGGTTCCAGCCTTGCGAGATGAATG-CCAGATGATGTCCGCCGTCCTGTAAATTCAAACC 25420 | |||||| | | | | || | ||||||| ||||||||||| || || || | || Sbjct 10714 AAGTTCCA-CGTATCACTAAAAACGGCCAGATGGTGTCCGCCGTCTTGCAAGTTAAGGCC 10656 Query 25421 ATGTCCGGCCGACGCAGGATGCACGCATAAGATTTCGATTTCGCCGCGGTTCCATGCTTC 25480 || ||||| || || || | ||| || ||| | || ||||||| || Sbjct 10655 GTGCCCGGCGCTGGCCGGGTGAGCCAATAGCATAGGGATCTTCCCTTGGTTCCACAGCTC 10596 Query 25481 CATCT-GCTTATTACCCTTAGCACCTTTCGCGAATGCCTGCGCCTGCGGGAAACGTTTCA 25539 || | || || | || |||||| | | |||| |||| ||||| |||| Sbjct 10595 GATATTGCGGGTTGCGGTTTT-ACCTTTGCCCAGTGCCACGGCCTCGGGGAATTTCTTCA 10537 Query 25540 GGATACGCTCCAGTTCGTGCTTGAACTGATAGGCTACCAGTAGCGGAGCACCCTGTAACT 25599 |||| || ||| | || || | | |||||| || | || || ||||| | | || Sbjct 10536 GGATGCGTTCCCGGTCATGGCGATAGTAATAGGCCACTAACAGTGGCGCACCGTTGAGCT 10477 Query 25600 CCTCAACAATTGACTCCAGCGCATCCAGTTTCATGTCGTGCACTTTCTCCCAGTCTTTGG 25659 | ||| ||| ||||| ||||| ||||| ||| || || | ||||||||| | Sbjct 10476 CTTCATAAATAGACTCGAGCGCGTCCAGCTTCTCGTTATGAATAAGCTCCCAGTCACCTG 10417 Query 25660 TTGCTTCTCCGTCTGGCCCTGATACATACACAGCACCAGAAGCAATCTGCAAACACTTTG 25719 | | || ||||| | | | ||||| || ||||| ||||| |||||||| || || | Sbjct 10416 TCGGCTCACCGTCGGCGTCGGTCACATAAACGGCACCGGAAGCTATCTGCAAGCATTTAG 10357 Query 25720 ACGTCTTTGCCGCGGCGTTAGCCGCTTCAACTTCTCCGCTT-TCCAGTTCCGCGAATAAC 25778 |||||| ||||| || ||| | || || |||| ||| || || || || || | | Sbjct 10356 CCGTCTTGGCCGCCGCATTAACGGCGTCGACTT-TCCCCTCATCGAGATCGGCCTTCAGC 10298 Query 25779 TTTTCCTCCATATCGATGTACGCCTGACGCGCTTTCTTCGGCAGATCTATTTCAACCGGC 25838 | | |||||||| || | | ||||||| ||||| | | | ||| Sbjct 10297 AGCTTCACCATATCGTCATAGACTTTTTGCGCTTTACGGGGCAGGTAGACCGGACGCGGA 10238 Query 25839 ACTATAATAGGCGCTTCACAACCGAACCACTCAGCGGCGTCAATCGTGAGACTAATGTCC 25898 |||| ||| | | ||||||||||||| | | || ||||| | ||| || ||||| Sbjct 10237 ACTACAATCGCCTCTTCACAACCGAAGTATTTAGACGCGTCTACCGTCAGCGAGATGTCG 10178 Query 25899 TTCATCTTCTGGTGGATCTCATTATCTGCACCAGG-ACGCGCATGATA-CTCCCGCGCCA 25956 || | || || | |||| | || | | | |||| || | ||| Sbjct 10177 GCCAATGCACGATGTATGCGCTGTTCTGATCTCGGCATGGGTATGAGGTCTACGGCGTAT 10118 Query 25957 TCGCCGACTTACCTTTTTGCACAGAGTTGAACCAGCGGTCGGTGAACGCAGTGTACGATG 26016 | || | | |||||||| ||| |||| | ||||| ||||||| ||| | |||| Sbjct 10117 TTGCTGTCGG--CTTTTTGCTTCGAGGTGAAATACCGGTCTTTGAACGCGGTGAAAGATG 10060 Query 26017 AACCGAGGCGCTCGCCAGCGTCGATAAACCAGTTCTGGCCCCACAGGTCTTTGAGGCCGT 26076 || || ||| ||||||| || |||||||||||||| ||||| || || ||||| |||| Sbjct 10059 TGCCCAGACGCGCGCCAGCATCTATAAACCAGTTCTGACCCCAAAGATCCTTGAGCCCGT 10000 Query 26077 TAGGCGACGGTGTGCCCGTCAGATTGATGAAACGCTTAACTTTACCGAACGCCACTTTGC 26136 | | | || || ||||| | || || | ||||| ||||| ||| | Sbjct 9999 TTGTAGCGGGCGTACCCGTTAAGTTCCACCAATACCGGACTTT----GACGCCTTTTTTC 9944 Query 26137 ---TGAGCGCCTTTGCC-----CGCTTGC-----TACCACCAGAACGGCTACGGAATGAC 26183 || ||| |||||| | | || || || ||| | ||||| ||| Sbjct 9943 TTATGGGCGATTTTGCCAAGAGCACGGGCGCGTTTAGACCCGCCACGCGTTCGGAACGAC 9884 Query 26184 TTCAGTTTCGTACTCTCATCTGCAACGATAACCGTAAAAGGCCAGTCGTCTTTGCCGTAG 26243 || || || || || || ||||||| ||| ||||| ||||| ||||| || | Sbjct 9883 TTAAGCTTTGTCGATTCGTCGGCAACGACAACGGTAAAGGGCCAATCGTC---ACCAAGG 9827 Query 26244 TAGTCAATCAGCCACT---CGATAACTTCGTAGTTGGTACACACCACGTTAACATCTGAC 26300 || | | || ||| | ||||| |||||||| ||||||||||||| | || | Sbjct 9826 TATTGCACCAACCATTCTGCGATA---TCGTAGTTACAACACACCACGTTATC--CTTA- 9773 Query 26301 TCCAGCG---CCGCGATGCGGCGTTTCT-CTGAACCTGTCGCATCTACGACACGCAGGCA 26356 || ||| | | ||| | || ||| || || | || ||||| |||| Sbjct 9772 -CCGGCGAGTACTTGTTGCCGATAGGCTACTGGCCCGGTGCCGTCGACGACTTGCAGTGC 9714 Query 26357 CGGGAATCGCCATTTCTCTTGTTCTGCCGGCCATGTACCTGATGCAACGCGCAACGGGGC 26416 || || | |||||| ||||| ||| | ||||| || | || |||||||||| ||| || Sbjct 9713 GGGAAACCCCCATTTGTCTTGCTCTCCGGGCCACGTCGCGGACGCAACGCGCAGCGGCGC 9654 Query 26417 GAGAATTAACACGCGGTCGTCGTCCGTAAGTTGCCCGTTGCGGAACAGGCGGTTTAAAGT 26476 ||| | | ||||| || | | | |||| ||| | ||||| |||||| | Sbjct 9653 GAGCACAAGGACGCGATCTTTGGGCCCGAGTTCGCCGCTCTTGAACATCTGGTTTAGCGC 9594 Query 26477 CCACAG 26482 |||||| Sbjct 9593 CCACAG 9588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139126698058348