Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_027994.1 Length=41632 Score E Sequences producing significant alignments: (Bits) Value seq139038 181 3e-41 >seq139038 Length=11747 Score = 181 bits (200), Expect = 3e-41 Identities = 680/1062 (64%), Gaps = 41/1062 (4%) Strand=Plus/Minus Query 27589 CCGGCACGGAACGTATCAAGCGCGGTTTCTTCGCCAGCCAGCCACGCCAAACCGCGGCCT 27648 ||||||||||| || || ||| | | ||||| || || ||||| ||||| || || || Sbjct 7978 CCGGCACGGAATGTCTCGAGCACAGACTCTTCACCTGCAAGCCATGCCAACCCACGCCCC 7919 Query 27649 TCAACGTTCGAGTAGTCGGCGACGACAAACTTATGTCCGGCTTCCGGG---ATAATGCAG 27705 |||||||| | ||||||||| || || | ||| || ||||||| ||||| || Sbjct 7918 TCAACGTTAGCGTAGTCGGCAACAACCAGCTTCA-TC--GCTTCCGCTGCAATAATACAA 7862 Query 27706 CTGCGAACCGTAGATGCCGTTAGCTTGGCTACATCAAAACGGCGATGTGCTCGGCCCTTA 27765 || ||||| ||||||||||||||||| | ||| | | | | ||| || | Sbjct 7861 GATCGGACCGTCGATGCCGTTAGCTTGGCGATATCGTAGCAGTTCTCCGCTTTACCTCGA 7802 Query 27766 AGTAATGCTGAAAT--------AC-----------CTTTATCCAG-----TTCA---TCA 27798 |||| || ||| || ||| ||| ||| || Sbjct 7801 AGTAGTGACTCAATCGCGAGTGACAAGTCTTTTGACTTGGGCCAAGGCTTTTCTGGGTCG 7742 Query 27799 TCGTGATAGTACCCACGCGCCAGGTTCTGCGGCTGGAAGCCTTTACCCGCAAATCGTAAC 27858 ||||| || |||||||| || || |||||||| || |||||| || || ||| || Sbjct 7741 TCGTGGTAATACCCACGTGCAAGATTCTGCGGTTGAAAGCCTCGCCCAGCCCATCTTAGG 7682 Query 27859 GTACGTTTAGCTCCACCATACTGGATGCAACCGCGACGGCGGTCGTCAGACGAGCGGCCT 27918 || || || || |||||||| || | ||||| || || ||| |||| | || | || Sbjct 7681 GTTCGCTTGGCGCCACCATATTGAAGACAACCCCGGCGCCGGCCGTCGGCGGACAGACCC 7622 Query 27919 AACAGCAGCGGGTTATATTTCGTTGACGCAGTGGATGCCGCCCCGAGGCGCATTTCTATA 27978 | || || || ||||| || || || || || || || |||||||||||||| || Sbjct 7621 TCGATAAGTGGCTTGTATTTTGTCGATGCCGTTGACGCTGCGCCGAGGCGCATTTCAATG 7562 Query 27979 ATCGTGCGGGCGTCGTCCGGTAAATCATCGTCAGCAAGCAGGTCGTTAAGCGTTGACTTC 28038 || |||||| ||||| || | ||| || | |||||||| | | |||| Sbjct 7561 ATAACGCGGGCTTCGTCTGGGAGATCTGGATCTTCTAGCAGGTCCAGCAAGACCGCCTTC 7502 Query 28039 TGCGCGTTGTGGATGCGATGCGCAGGCGCCAGTTCACGCAGAATCGGCAGGAAGTCCTTA 28098 || || || | | | ||||| || || || | |||| ||||||||| ||| | Sbjct 7501 TGGGCATTCGGTACGGTGTGCGCCGGGGCTAGACCGCGCAATGCCGGCAGGAAATCCGCA 7442 Query 28099 CCTGTAAGCGAGCCGCCGTATTTACGTTGGGCTTCTTCCTGTAACTGTGCCTTGTGTTTC 28158 || ||||| ||||||||| || || | | | | | ||| || | | Sbjct 7441 CCGGTAAGACCTGAGCCGTATTTGGCCATAGCCTCGGCTTTAAGTTCTTTCTTATGCTCC 7382 Query 28159 TCCACAGCTTCAATTGCGGCTTCCGCCAGCGCAACGTCGACCTTAAACCCGCGGTCGTTA 28218 | | || | | ||| || ||| | ||||| | |||||| ||||| ||| Sbjct 7381 TGTATGGCCTGTACCGCGCAACGAGCAAGCTCGGTATCGACGTAAAACCCTCGGTCATTA 7322 Query 28219 ATTAACTGGTCCAGTTCCAGTACACGGTCTTCGAACTC---GGAGTTACCCCAACGCGGC 28275 || | |||||| || | | | |||| ||| | ||| |||||| ||| ||| Sbjct 7321 ATGATCTGGTCAAGCACTAAGATCCGGTTTTCAATCTCCGTGGAGTT---CCATGTTGGC 7265 Query 28276 AACTTATGGAACACTTCACGCATCGCGGTGATGTCGCTAACGGCGTACTTGATGAACAGC 28335 | | ||| | |||||||| | ||||| |||| ||||| | | || | Sbjct 7264 AGTCGGTAGAAGGCCTCACGCATAGAAGTGATATCGCGCCGTGCGTAGTCTACAAAGCGT 7205 Query 28336 GCCCACTCATCCGGGTGCGTTTCAGCAGTGTAGCGGCGAATTTTGTAGTTCTTCGGCGTC 28395 ||| || || |||||||| | |||||||| || || ||||| ||||| ||||| Sbjct 7204 TTCCATTCTTCGGGGTGCGTCTGCTTTGTGTAGCGCCGTATCTTGTAATTCTTAGGCGTG 7145 Query 28396 GGTTTAGAGAAACGCTGAATAAGCGCTTTGCCTCGTTTGTCTTTCGCGTTGTCTGCAGAC 28455 |||||| |||| ||||| || | ||| || || || ||||| ||| || | | Sbjct 7144 GGTTTACAGAAGCGCTGGATCAACGCCTTACCCGCCTTATCTTTGGCGAGCTCCACGGGA 7085 Query 28456 ACGCCAAGCACTTCGCACAATGCGTCGAGTGAACCCGGCAGCGCGTGACGAAACGCCCAA 28515 ||| ||||||||||| | | ||||| |||||||||| ||||| || | ||| Sbjct 7084 ACGTTTAGCACTTCGCAGAGTTTCTCGAGCGAACCCGGCAACGCGTATCGGTAGGCCTCG 7025 Query 28516 ATCATCGTATCAATGGTGTTGCTTACG-GGAATATCAAAACCCCAGCAGTGCTTCATGAT 28574 | ||| || || ||| || |||| | || || | | |||||| |||| | || | Sbjct 7024 ACCATTGTGTCGATGATG-TGCTCGGGTGGGATCGCGATACCCCAACAGTTCGACAGCAC 6966 Query 28575 GAGTCTGTCGAACATTGAGCCGTTGTGCCACACCATCTTAAT 28616 |||||||||||||| || ||| || | ||||| ||| || Sbjct 6965 AGGTCTGTCGAACATTAAGAAGTTTTGGCCCACCAACTTCAT 6924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132881027785688