Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_027995.1 Length=41666 Score E Sequences producing significant alignments: (Bits) Value seq48654 178 3e-40 >seq48654 Length=89670 Score = 178 bits (196), Expect = 3e-40 Identities = 284/400 (71%), Gaps = 26/400 (7%) Strand=Plus/Minus Query 41205 GATCCAGAAATCCGTTACATGCCAAGCGGCGGCGCGGTTGCTAATCTAAGCATCGCCACA 41264 ||||| ||| |||| || ||||| | |||||| || ||||| ||| | | | | || || Sbjct 37583 GATCCCGAAGTCCGCTATATGCCTAACGGCGGTGCTGTTGCCAATATCACCCTGGCAACT 37524 Query 41265 ACTGAAAGCTGGAAGGATAAAACCACCGGCGAGAAGAAAGAACAAACGGAATGGCACCGC 41324 ||||||||||| || || | ||||||||| ||||||| |||| |||||||||||| Sbjct 37523 TCTGAAAGCTGGCGCGACAAGGCGACCGGCGAGCAGAAAGAGAAAACTGAATGGCACCGC 37464 Query 41325 GTTGTCATCTTCGGTAAGCTGGCAGAAATTGCTAGCGAATACCTGCGCAAAGGTAGCAAG 41384 ||||| | ||||| || || |||||| | || ||||||||||||| ||||| || Sbjct 37463 GTTGTGTTGTTCGGCAAACTCGCAGAAGTCGCGGGCGAATACCTGCGTAAAGGCTCTCAG 37404 Query 41385 GTGTTCATTGAAGGCAGCCTGCGAACGCGTAAATGGCAGGACCAGGCTGGCGTTGATCGC 41444 || | ||||||||| |||| ||| ||||| ||| || ||||| || ||||| Sbjct 37403 GTTTATATTGAAGGCGCACTGCAAACCCGTAAGTGGACCGATCAGGCCGGTGTTGAAAAA 37344 Query 41445 TACACCACTGAAATC------AACGTGGG------CATG--AATGGACGGTTGTTGATGC 41490 |||||||| |||||| ||||| || |||| ||| ||| || | ||| Sbjct 37343 TACACCACCGAAATCGTGGTAAACGTTGGTGGCACCATGCAGATGCTGGGTGGTCG-TGC 37285 Query 41491 TGTCAGCGGCCAACGATAACCAGGCCGGTGGGCAAAGC--CAGGGCAGCCAGCAAGGCGG 41548 || | |||| | | |||| ||| || | | || || ||| ||||||| ||||| Sbjct 37284 TGGCGGCGGTGCTC---CAGCAGG-CGGCGGTC-AGGCTTCA-GGCGGCCAGCAGGGCGG 37231 Query 41549 ATGGGGTAATCCGCAGCAGCCAACCCACAGCGGCAAACAG 41588 ||||||| | || ||||||||| || ||||||| ||| Sbjct 37230 ATGGGGTCAACCTCAGCAGCCA---CAGGGCGGCAACCAG 37194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132989648138256