Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq43985 114 2e-20 >seq43985 Length=4878 Score = 114 bits (126), Expect = 2e-20 Identities = 483/753 (64%), Gaps = 21/753 (3%) Strand=Plus/Minus Query 110867 TCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAG 110926 |||||||| ||| | ||||| | |||| | | || || || ||| | |||||||| Sbjct 2175 TCCCACATATCATATTGAAGTATTCCTTTGCTGACTGGTGAGCCTTCATAAGTTTCATAA 2116 Query 110927 GAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATA---CATGGTT 110983 | ||| | |||||||||||||||||| || || | ||||| ||| ||| ||| Sbjct 2115 GTACCATATTTTTCAGCCAATTCACAGCTAGCTTCTA---ATGCGCCATAGTACATAGTT 2059 Query 110984 TCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAA 111043 ||||| || | ||| | | || | || || ||| ||| || || || Sbjct 2058 TCAAAAATTTGTTGATTTAAGAGCGCAGCCTGCTCGCTCTCGTATGGGTAACG-CATAAG 2000 Query 111044 -ATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA 111102 || || | || || | |||||| | || | |||||||| | |||| | |||||| Sbjct 1999 GATTAAAGCGTCTGCAAAACCTTGTATGCCAATGCCAATAGGGCGATGTCTGAAATTAGA 1940 Query 111103 CTTTCGCGCAGTCT--CAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTG 111160 ||| || || ||| || |||| |||| |||| |||| | |||||||| Sbjct 1939 CTTCTTTGCC-TCGGGCAATGG-ATAATGATTTATGTCGATGATTTTATTTAGATTACGT 1882 Query 111161 GTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTG 111220 || ||| || |||| | || | | | | |||| | || | ||| | Sbjct 1881 GTTACAGTCATTGTAACCTCCTTCAAACGCTTAAAATCGTACGTTT---TTTCTGGTGTA 1825 Query 111221 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTG 111280 ||| || | || || || ||||| ||||| ||||||||| ||||| ||| Sbjct 1824 ACAAACATATTGAGTGCAATCGATGCTAAATTACAAACAGCCACTTCATCTGGTGCTGAA 1765 Query 111281 TACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTA 111340 ||||| | |||||||||||||| || || ||||| || || | ||| | ||| ||| Sbjct 1764 TACTCAACTATTTCTGTACATAAATTACTACATTTAATAGTGCCAATATTTTGTTGATTA 1705 Query 111341 CTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGAT 111400 ||||| | || || ||||||||||| ||||| || || || || ||||| || ||| Sbjct 1704 CTCTTTCTATTACATGCATCCTTGTACAGCATATATGGTGTGCCTGTCTCTACTTGCGAT 1645 Query 111401 TTGAGAATAGCCTTCCAAACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCC 111460 | | ||| || ||||| | ||| ||| | || || ||||| || | Sbjct 1644 TCAATAATGGCAAACCAAAGACTTTGTGCTTTTACTTTCTTATTAGCGCGTCCGTCTTGC 1585 Query 111461 TCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCC---ACCGCGTCGGAGAGACCTGGT 111517 || || || || || | |||||| || || ||| ||| | | || || || Sbjct 1584 TCATATTTAGTATATAATTTTTCAAATTCATCGCCCCATACCTCATGCAAG---CCGGGA 1528 Query 111518 GCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGG 111577 ||||| |||||| | ||| ||||| | || | ||||| || ||||| ||||| Sbjct 1527 CACTTGTGTGGACACATAAGCGACCAATCTTCATTAGCTTCAACACGTTTCATAAAAAGA 1468 Query 111578 TCTGGAATCCACAGGGATGAAAAGAGATCTCTA 111610 ||||||||||| | | |||| | ||||||| Sbjct 1467 TCTGGAATCCATAATGCATAAAATAAATCTCTA 1435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626940433281600