Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq21876 170 2e-37 seq88566 138 1e-27 seq123102 131 2e-25 seq138766 123 3e-23 >seq21876 Length=2391 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || || || | || ||||||||||| || || || |||||| | | Sbjct 512 ATGCAAATCTTCGTAAAAACTTTGACTGGCAAGACTATCACCCTGGAAGTTGAGCCGTCT 571 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | |||||||| || |||||||||||||||||||| ||||| ||| Sbjct 572 GACACCATCGAAAACGTTAAGGCTAAGATCCAGGACAAGGAGGGAATTCCCCCAGATCAG 631 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| |||| || || || |||||| | || |||| |||||| | | || || || Sbjct 632 CAGCGTTTAATCTTCGCCGGCAAGCAATTGGAAGATGGCCGTACCTTGTCCGATTACAAC 691 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || |||||||| || |||||| | ||| ||||||| || ||||| Sbjct 692 ATTCAGAAGGAATCAACGCTTCATTTGGTCCTGCGTCTACGTGGTGG 738 Score = 114 bits (126), Expect = 1e-20 Identities = 104/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 27502 AAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGAT 27561 |||||||||||||| ||||| ||||||||| |||| || ||||| |||||| | || ||| Sbjct 380 AAGGAGGGAATTCCCCCAGATCAGCAGCGTTTAATCTTCGCTGGCAAGCAATTGGAAGAT 439 Query 27562 GATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGT 27621 | |||||| | | ||||| ||| |||||||||| || || || ||| | ||| | ||| Sbjct 440 GGCCGTACCTTGTCTGACTACAATATCCAAAAGGAGTCAACGCTCCATTTGGTCCTACGT 499 Query 27622 CTTCGCGGTGG 27632 || || ||||| Sbjct 500 CTACGTGGTGG 510 Score = 109 bits (120), Expect = 6e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || || || | || || || ||||| ||| | || || ||| || Sbjct 740 ATGCAAATCTTCGTAAAAACTTTGACAGGGAAAACTATCACTTTAGAAGTCGAGCCATCC 799 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | || ||||| |||||||||||||| || ||||||||||| || Sbjct 800 GACACTATTGAGAACGTCAAAGCTAAGATTCAGGACAAGGAAGGTATTCCTCCAGATCAA 859 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGA 27560 || ||| |||| || ||||| |||||||| ||||| Sbjct 860 CAACGTTTAATCTTCGCTGGCAAGCAACTGGAGGA 894 Score = 89.7 bits (98), Expect = 6e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | || |||||||| || || | ||||||||| || Sbjct 18 ATGCAGATCTTCGTTAAGACATTGACTGGCAAGACCATCACCTTGGAGGTTGAGCCATCC 77 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| || | || | |||||||| || |||||||||||||||||||| ||||| || Sbjct 78 GATACTATCGAGAACGTTAAGGCTAAGATCCAGGACAAGGAGGGAATTCCCCCAGATCA 136 >seq88566 Length=1870 Score = 138 bits (152), Expect = 1e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || || || ||||| || || || || || ||||||||||| | Sbjct 457 AATGCAAATATTCGTTAAAACCCTTACGGGTAAAACCATCACACTTGAGGTTGAACCTTC 398 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| |||| | || | || || || ||||| || ||||| |||||||| ||||| || Sbjct 397 CGATACTATTGAACATGTCAAAGCCAAGATTCAAGATAAGGAAGGAATTCCACCAGATCA 338 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| ||| ||||||||||||| || || || || || | || || | | || ||||| Sbjct 337 GCAACGTTTAATTTTTGCTGGCAAACAGCTGGAAGACGGACGAACTTTGGGTGATTATAA 278 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 | ||||||||||| || | ||| |||| |||||||| Sbjct 277 CATTCAAAAGGAATCTACGTTGCATTTAGTATTGCGTCT 239 >seq123102 Length=1410 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| || || | || ||||| ||||| || | || ||||| | Sbjct 816 ATGCAAATATTTGTTAAAACATTGACTGGCAAAACTATCACATTGGAAGTTGAACCTTCG 757 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || | || || |||||||| || ||||| || ||||| |||||||| Sbjct 756 GATACCATCGAGAACGTTAAAGCAAAAATTCAAGATAAGGAAGGCATTCCCCCAGACCAA 697 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| ||||||| || || ||||| || ||||||| || || || | || || || Sbjct 696 CAACGTTTAATTTTCGCCGGCAAGCAGCTTGAGGATGGACGCACATTATCCGATTACAAC 637 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||||||||| || ||||| | || ||||||| || ||||| Sbjct 636 ATTCAAAAGGAATCAACACTTCACTTGGTTCTGCGTCTGCGGGGTGG 590 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || || || || || ||| | ||||||||| | ||||| ||||| |||| | || ||| Sbjct 1020 ACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCTGATACCATTGAAAATGTTAAAGCT 961 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 |||||||| || || || ||||| || ||||| || || ||| | ||||| ||||| || Sbjct 960 AAAATTCAAGATAAAGAAGGAATCCCACCAGATCAACAACGTTTGATTTTCGCTGGCAAA 901 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || | ||||||| || || | | || |||||| | || |||||||| || | ||| Sbjct 900 CAGTTAGAGGATGGACGCACATTGTCCGATTATAATATTCAGAAGGAATCTACATTGCAT 841 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || ||||| || || Sbjct 840 TTAGTATTACGCCTTCGTGGAGG 818 >seq138766 Length=1258 Score = 123 bits (136), Expect = 3e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || || || || || || || || || || || ||||| ||| || Sbjct 639 AATGCAAATCTTCGTAAAAACACTAACGGGAAAAACAATAACACTGGAGGTGGAGCCATC 698 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| ||| | ||||| ||||| ||||| || ||||| ||||| ||||| || Sbjct 699 CGAAAATGTTGAGAATGTCAAGGCCAAAATACAGGATAAAGAGGGGATTCCACCAGATCA 758 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || |||||||||||||| || ||||||| | || || | || || || Sbjct 759 GCAGAGACTGATCTTTGCTGGTAAGCAGCTTGAGGATGGAAGAACACTTTCCGATTACAA 818 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | | || || || || || | ||||| || || | ||||| || || Sbjct 819 TATACAGAAAGAGTCTACAATCCATCTTGTTCTGAGGCTTCGTGGAGG 866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569319157751520