Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_028448.1 Length=167467 Score E Sequences producing significant alignments: (Bits) Value seq14905 154 2e-32 seq2788 120 3e-22 seq2551 96.9 4e-15 >seq14905 Length=119551 Score = 154 bits (170), Expect = 2e-32 Identities = 144/183 (79%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 3806 TTACAAACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGA 3865 ||||| |||| ||| || ||||||| ||| ||||| ||||||||||||| |||| || Sbjct 42459 TTACAGGCTCTGAGTGAAAGTACGAGTGATCACGTCCTGCTGCTGTTCCGGCGTCAACGA 42400 Query 3866 GTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 3925 |||||| || || || || || || |||||||| |||| ||| ||||| || || ||||| Sbjct 42399 GTTAAAACGCACGGCGTACCCCGAGACACGGATAGTCAACTGAGGATACTTCTCAGGATG 42340 Query 3926 CTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACC 3985 || | |||||||| || || |||||||||| ||||||||||| || || || || || Sbjct 42339 TTTTATCGCATCTTCGAGCGTCTCACGACGCATGACGTTAACGTTAAGATGCTGCCCCCC 42280 Query 3986 TTC 3988 ||| Sbjct 42279 TTC 42277 >seq2788 Length=136445 Score = 120 bits (132), Expect = 3e-22 Identities = 288/433 (67%), Gaps = 2/433 (0%) Strand=Plus/Plus Query 81508 CTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTTTTCAA 81567 ||| || || || ||||| ||||||| |||||| |||| || || ||| ||||||| Sbjct 19279 CTGCACGCCGTAGTCCATGTGACGAACGCGGTTGCCTTCAACACCACGGTTGTTTTTCAG 19338 Query 81568 AACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCC 81627 ||| || || |||||||||||| ||||| || || || | || ||||| ||||| Sbjct 19339 AACCAGCAGGCTTTCAACTTCCAGGTGCCACATCGGGTAGAACAGGGTCGCAGCACCGCC 19398 Query 81628 ACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATGTTTCCAAAAAGGAAT 81687 || | || ||||| || || |||||||| || ||||| || || || | || || || Sbjct 19399 GCGCACGCCGCCCTGAGAGCAGGATTTAACCGCCGTCTGGAAGTGCTTATAGAACGGGAT 19458 Query 81688 AACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTCAGCACGAATCATACC 81747 | || |||||| | ||||||| || |||| ||| ||||| || || Sbjct 19459 ACAGCCGGTATGGAATGCTTCACCGCCGCGAATCGGGCTACCCAGCGCACGGATGCGGCC 19518 Query 81748 TACGTTAATTCCAATTCCAGCGCGTTTAGAAATATATTCAACAATTGAAGCAGAAGCT-T 81806 |||| || || || || ||||| | |||| |||| || | || || | || | Sbjct 19519 AGCGTTGATGCCGATACCTGCGCGCTGTGAAACGTATTTCACGA-TGGCGCTGGAGGTCG 19577 Query 81807 TATTAATTGACTTCAATGAATCACCAGCTTCAATAACAACGCATGAACTAAACTGTCGAG 81866 || || || | || || || || || | ||||| || || ||||| |||| Sbjct 19578 CGTTGATGGAGTCCAGGCTGTCGCCGCACTCGATCAGTACGCAAGAGCTGAACTGGCGAG 19637 Query 81867 TCGGAGTACGGCAACCAGCCATAATAGGAGTTGGCAATGAAATCTGTCGAGTAGATACTG 81926 |||| || || || | |||||| || || |||| ||||||| || || || | Sbjct 19638 TCGGGGTGCGCACGCCGGACATAATTGGCGTAGGCAGAGAAATCTTGAAGGTTGAAACCG 19697 Query 81927 CTTCATAAAAACG 81939 | ||||| ||||| Sbjct 19698 CATCATAGAAACG 19710 >seq2551 Length=53185 Score = 96.9 bits (106), Expect = 4e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 3818 AGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAAC 3877 |||||||||||| | || ||||| |||||||||| || || ||||| ||||| || Sbjct 37104 AGTAAAGGTACGGGTAATCACGTCCTGCTGCTGTTCTTTGGTTAGTGAGTTGAAGCGTAC 37045 Query 3878 TGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATC 3937 ||||| || || || ||||| |||||||| || |||| || |||| | | || || Sbjct 37044 CGCATAGCCTGAAACGCGGATAGTCAGCTGAGGGAATTTCTCAGGATTTTCCATGGCCTC 36985 Query 3938 TTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTC 3988 ||| | || || || |||||||||||||| || ||||| ||||| Sbjct 36984 CAGCAGCATCTCGCGGTTCATTACGTTAACGTTCAGATGCTGACCGCCTTC 36934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534835197814320