Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq123102 167 2e-36 seq21876 163 2e-35 seq88566 136 3e-27 seq77695 95.1 1e-14 >seq123102 Length=1410 Score = 167 bits (184), Expect = 2e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| |||||||| ||||| |||| ||||| |||| || | ||||| ||||| || Sbjct 816 ATGCAAATATTTGTTAAAACATTGACTGGCAAAACTATCACATTGGAAGTTGAACCTTCG 757 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| || ||| |||||||||||| || |||||||| || || || ||| Sbjct 756 GATACCATCGAGAACGTTAAAGCAAAAATTCAAGATAAGGAAGGCATTCCCCCAGACCAA 697 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || |||||||| | ||||||||| || | || || | || | |||||||||||| Sbjct 696 CAACGTTTAATTTTCGCCGGCAAGCAGCTTGAGGATGGACGCACATTATCCGATTACAAC 637 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||| || || | || |||||| ||||| |||||||||| || Sbjct 636 ATTCAAAAGGAATCAACACTTCACTTGGTTCTGCGTCTGCGGGGTGGTAT 587 Score = 105 bits (116), Expect = 6e-18 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 27010 TGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAAC 27069 |||| || || | || ||| | || || || || || || | ||||| | || ||| Sbjct 1022 TGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCTGATACCATTGAAAATGTTAAAG 963 Query 27070 AAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCA 27129 ||||||||||| |||||||| || ||||| |||||||| ||||| || | ||| |||| Sbjct 962 CTAAAATTCAAGATAAAGAAGGAATCCCACCAGATCAACAACGTTTGATTTTCGCTGGCA 903 Query 27130 AACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTAC 27189 |||| || || || | || | |||||||| || ||||| ||||| || || || | Sbjct 902 AACAGTTAGAGGATGGACGCACATTGTCCGATTATAATATTCAGAAGGAATCTACATTGC 843 Query 27190 ATTTGGTTTTGCG 27202 |||| || || || Sbjct 842 ATTTAGTATTACG 830 >seq21876 Length=2391 Score = 163 bits (180), Expect = 2e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || ||||||||| |||| |||||| |||| || || ||||| || ||||| Sbjct 512 ATGCAAATCTTCGTAAAAACTTTGACTGGCAAGACTATCACCCTGGAAGTTGAGCCGTCT 571 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || ||||| || || || || || ||||| Sbjct 572 GACACCATCGAAAACGTTAAGGCTAAGATCCAGGACAAGGAGGGAATTCCCCCAGATCAG 631 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||||||||| | ||||||||| ||||||||||| | ||| | |||||||||||| Sbjct 632 CAGCGTTTAATCTTCGCCGGCAAGCAATTGGAAGATGGCCGTACCTTGTCCGATTACAAC 691 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||| || || | |||||||| ||||| | || ||||| || Sbjct 692 ATTCAGAAGGAATCAACGCTTCATTTGGTCCTGCGTCTACGTGGTGGTAT 741 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27084 AAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGAC 27143 || || || || || || ||||| ||||||||||| | ||| ||||| ||||||||||| Sbjct 380 AAGGAGGGAATTCCCCCAGATCAGCAGCGTTTAATCTTCGCTGGCAAGCAATTGGAAGAT 439 Query 27144 AGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGT 27203 | ||| | || || ||||| || ||||||||||| || | |||||||| | ||| Sbjct 440 GGCCGTACCTTGTCTGACTACAATATCCAAAAGGAGTCAACGCTCCATTTGGTCCTACGT 499 Query 27204 TTGCGGGGTGGCAT 27217 | || ||||| || Sbjct 500 CTACGTGGTGGTAT 513 >seq88566 Length=1870 Score = 136 bits (150), Expect = 3e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| ||||| || ||||| || || || || | || || ||||| || ||||| ||| Sbjct 456 ATGCAAATATTCGTTAAAACCCTTACGGGTAAAACCATCACACTTGAGGTTGAACCTTCC 397 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| |||||| || |||||||| || ||||| || ||||| ||||| Sbjct 396 GATACTATTGAACATGTCAAAGCCAAGATTCAAGATAAGGAAGGAATTCCACCAGATCAG 337 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCC-GATTACAA 27166 || |||||||| | || |||||||| |||||||| | ||| | || ||||| || Sbjct 336 CAACGTTTAATTTTTGCTGGCAAACAGCTGGAAGACGGA-CGAACTTTGGGTGATTATAA 278 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGT 27203 |||||||||||| || || || ||||| || |||||| Sbjct 277 CATTCAAAAGGAATCTACGTTGCATTTAGTATTGCGT 241 >seq77695 Length=1756 Score = 95.1 bits (104), Expect = 1e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 135503 CGAGAAGGCAAAATGCACGGATTTATGCGCATGTATTGGGCAAAAAAGATATTGGAATGG 135562 || |||||||||||||| |||||| |||| ||||||||||| || || ||||| |||||| Sbjct 810 CGTGAAGGCAAAATGCATGGATTTTTGCGTATGTATTGGGCTAAGAAAATATTAGAATGG 869 Query 135563 TCTGCATCGCCTGCAGAGGCGCTACAACACGCAATATTTTTTAATGATTACTACAGTTTA 135622 || | |||| | | ||| || | || | |||| |||||| | |||||||| Sbjct 870 GCTCCGACGCCCGAATTGGCTCTGGAGACGGCCCTTCTTTTAAATGATAAATACAGTTTG 929 Query 135623 GATGGACGCGATTCAAATGGCTACGTAGGT 135652 ||||| | ||| | ||||| || || ||| Sbjct 930 GATGGGTGTGATCCGAATGGTTATGTTGGT 959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434162479201920