Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_028672.1 Length=149732 Score E Sequences producing significant alignments: (Bits) Value seq2788 266 3e-66 >seq2788 Length=136445 Score = 266 bits (294), Expect = 3e-66 Identities = 285/377 (76%), Gaps = 0/377 (0%) Strand=Plus/Plus Query 24285 GATGTCGTCAAAGACGATCGACGGATCTGCCAGGATGTTACGGATGATATGGGTGTATGA 24344 ||| |||||||| || | |||||||| | ||| ||||| || ||||| ||||| || Sbjct 17467 GATATCGTCAAACACCAGTGACGGATCGTTGACGATATTACGAATAATATGCGTGTACGA 17526 Query 24345 GCGAGAGTGGATAGTCTCACTGAACGCCCAAGTCTCTACCCATGTTTCCAGGGTTGTGTC 24404 ||| |||||||||||||| ||||||||| ||||| ||||| || || || || Sbjct 17527 GCGTGAGTGGATAGTCTCGGAGAACGCCCAGGTCTCAACCCAGGTCTCAAGCTCTGGAAT 17586 Query 24405 GGACACGATCGGGAGCAGAACTGCGTTCGGCCCACGGCCCTGTACAGAATCCAGAAGGAT 24464 ||| | | ||| || || | |||| || | ||||||||| | || ||||| || | Sbjct 17587 GGAGATCAGCGGCAGTAGCGCCACGTTAGGGCTACGGCCCTGAATCGAGTCCAGCAGCGT 17646 Query 24465 CTGGTACTTCAGGTTGCTGATGAAGATGTGCTTCTCGTGATCCGGCAGATTCATGTAGTC 24524 ||| |||||||||||||| | ||| ||||| || || || ||||||||| | | |||| Sbjct 17647 CTGATACTTCAGGTTGCTCAGGAAAATGTGTTTTTCATGCTCCGGCAGACCCTGGAAGTC 17706 Query 24525 GATACGGTCACGGGTCACGTTAACTTCTTCCGGACGCCAGAAGAACGCCAGTTGCTTCTC 24584 |||||||||||||| |||| |||||||||||||||||||||||| | ||| ||||| || Sbjct 17707 GATACGGTCACGGGCAACGTCAACTTCTTCCGGACGCCAGAAGAAGGACAGCTGCTTTTC 17766 Query 24585 GATCAGCTTCTCGAACTTGGCGTGTTTCTGCTGGTCATAGCGAGAAACGTTCGGTGTCTC 24644 |||||| || ||||| | | | |||||||||||| |||| | ||||| | || Sbjct 17767 GATCAGTTTTTCGAAGATTTCATATTTCTGCTGGTCGAAGCGCGCCACGTTAACCGACTG 17826 Query 24645 GCCGAGGAACATCGGCT 24661 |||| ||||||||||| Sbjct 17827 ACCGAAGAACATCGGCT 17843 Score = 114 bits (126), Expect = 1e-20 Identities = 295/442 (67%), Gaps = 17/442 (4%) Strand=Plus/Plus Query 23727 GTTGATCCACGGAATCGGGTTCTTGGTCGGCTTACCGATCAGTTCACCCAGGCCAACCGC 23786 ||||||||| || |||||||| | | ||| || | || || ||| || || || Sbjct 16879 GTTGATCCATGGGATCGGGTTTGAGCGAGTCTT---GAACGGTGCAGTCAGACCCACGGC 16935 Query 23787 TCGCATACGCTGGTCGGTGATGTAGTCGATGTAACCGTCCAGCATACCTTTGTTCAGGCC 23846 ||||||| || ||||||||| |||||||| | || || ||||||||||||| Sbjct 16936 CTGCATACGGATGTTGGTGATGTATTCGATGTACTGGCAAAGAATGTCTTTGTTCAGGCC 16995 Query 23847 GATCATCGAACCGTCTTTGAACAGGAAG-CTGCCCCAGTCTTTCTCCTGCACCGATGCGT 23905 ||||||||| ||||| ||| || | |||||| |||||||||| ||| | |||| Sbjct 16996 GATCATCGAGCCGTCGCGGAAAAGATATTCTGCCC-AGTCTTTCTCTTGCTC---TGCGG 17051 Query 23906 CGATAAAGCCCTG-TCGTGCC--TCTTCGTAGCAATCTTCTGCCACACGTGCAAA---CA 23959 | | | | | | || | | |||| | ||| |||| || | || | | Sbjct 17052 CCAGCACGAACAGGTCATAACACTCTTTCTCGCACTCTTTGGCGATGATGGCCATTTCCG 17111 Query 23960 GGTCACCTTCGTTACCGTTCTGCATTTCTTTCAGCATATACTGAGTTCCGGACAAATGCA 24019 ||||| ||| |||| ||| |||||| | |||||| |||| || || | Sbjct 17112 GGTCA---TCGGCACCGGAGCGCAGCAGGTTCAGCGCGTGCTGAGTCCCGGTCAGGTGGA 17168 Query 24020 AGGCTTCATCACGAGCAATCAGTTCAATAATGTTGGTGTTACCCAGCATTACGCCGCGCT 24079 ||||| || || || || || | || || || | ||||| ||| | |||| | Sbjct 17169 GCGCTTCGTCGCGGGCGATAAGCTTGATGATTTTTGCATTACCTTCCATCAGCTCGCGTT 17228 Query 24080 CACCGAAAGCGAAGGAGCAGGCGAAGCTCACGTAGAAACGGATCGCTTCCAGTGCATTGA 24139 | |||| || || || ||||||||||| ||||||||||| | |||||||| ||||||| Sbjct 17229 CTGCGAAGGCAAATGAACAGGCGAAGCTGACGTAGAAACGCACGGCTTCCAGCGCATTGA 17288 Query 24140 TGTTGTGCAGACACAGATACAG 24161 | | ||| |||||||| || Sbjct 17289 CGCTCATCAGGCACAGATAGAG 17310 Score = 109 bits (120), Expect = 5e-19 Identities = 364/560 (65%), Gaps = 45/560 (8%) Strand=Plus/Plus Query 25497 GTCGATCGGCAGAATGCCCTGAGAGTATGTGGTCTCGTGGAAGAGATCACATTTGCCCAG 25556 ||||||||||||||| ||||| ||||| |||||||| | ||| || || | Sbjct 18516 GTCGATCGGCAGAATTCCCTGCGAGTAAGTGGTCTCTTTGAACCATGGGCAGGCACCTTG 18575 Query 25557 TTCTTTTGCCAGGTCAACCGACGCTTCCAGCAGGTAATACTGGAATGCTTCAGCCAGTTC 25616 || ||||| || || |||| ||||||||| ||||| | ||||| | Sbjct 18576 CTCACGCGCCAGTTCGTTAGAGGCTTTCAGCAGGTAGTACTGAATCGCTTCGAACGCGCG 18635 Query 25617 GTGAA-CAG--CATTTGC--TGCACGAGGATCGCTGTACTTCAGGCCACGCTTCGCCAGG 25671 |||| ||| | || || ||| || |||||||| || ||| ||| ||||| Sbjct 18636 GTGAGTCAGGGCGTTGGCGCTGC-CG----TCGCTGTAACGCACGCCGTTCTTGGCCAGA 18690 Query 25672 TAATATGCTAAGTTGGTCCAGCCAATACCCAGAGTACGTCG--CAGTTTAGTCTTCTCT- 25728 ||||| || ||||| | |||||||||||| ||||| || | || | | | | Sbjct 18691 TAATAAGCATAGTTGATAACGCCAATACCCAGCGTACGGCGGCCCATTGCGCCGCGTTTA 18750 Query 25729 GCCGCCAGAACCGGATAGTTCTGATAATCTAACAGACGATCCAATGCACGAAC--CAGTG 25786 || ||||| | || || | ||||||||| | ||| || | ||||| || || | Sbjct 18751 GCGGCCAGGATTGGGTAATCCTGATAATCGAGCAGGGCGTCAAGCGCACGCACTGCAAGG 18810 Query 25787 TACGGACAGGCTCACGCATGTCTTCCAGCTTCTCCACCTTGCCGAGGTTGATGGCAGACA 25846 || ||| ||| | || ||||| | || | ||||||||||| |||||||| Sbjct 18811 GTCGC-CAG-CTCTTCGAGATCATCCAGGCTTTCGATAGCGCCGAGGTTGAAGGCAGACA 18868 Query 25847 GAGTACACAGGGCCACTTCCCCCGG---GTCGTTCGGATCATTAA--------------- 25888 | ||||| || || | |||||| ||||||| ||||| | Sbjct 18869 GCGTACAAAGCGCGATTTCCCCTTCTTCGTCGTTCACGTCATTTAACGGCTTTTGTGGGC 18928 Query 25889 ------TGTCCGTAAT----CGGATGTGTCGGCAGGGCGATTTCCATGCACAGGTTGGAC 25938 | || | || ||| | || ||||| |||||||| | ||||||||||||| Sbjct 18929 GCGCGGTTTCANTCATTTAACGGCTTGGTTGGCAGCGCGATTTCAAGGCACAGGTTGGAC 18988 Query 25939 TGTTTCACCGGGGCCTGTTCGGGGTCGAACGGGCTATTAGTGTTGCAGTGGTCAACGTGC 25998 || ||||| || ||||||| |||||||||| ||||||||||||||||||||| Sbjct 18989 TGGCGAACCGGTGCAATAGCGGGGTCAAACGGGCTATGGGTGTTGCAGTGGTCAACGTGC 19048 Query 25999 TGCACGTAAATACGGCCTGT 26018 || | || |||||||| || Sbjct 19049 TGAATATAGATACGGCCGGT 19068 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 26215 TACAGCATTTTGTTCAACTGAAGCCCGTAGTCCACATGGCGAGCACGAGTGCTCTCAGTA 26274 |||| || |||||| | ||| | |||||||||| || ||| | || ||| ||| | Sbjct 19262 TACATCAGTTTGTTGATCTGCACGCCGTAGTCCATGTGACGAACGCGGTTGCCTTCAACA 19321 Query 26275 CCACGGTTGTTCTTCAGCACAATCAGGCTTTCAAAATCCCAGTGCCACATCGGATAAAA 26333 ||||||||||| ||||| || | ||||||||||| ||| |||||||||||| || || Sbjct 19322 CCACGGTTGTTTTTCAGAACCAGCAGGCTTTCAACTTCCAGGTGCCACATCGGGTAGAA 19380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478181837046720