Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_028686.1 Length=166313 Score E Sequences producing significant alignments: (Bits) Value seq2788 217 2e-51 seq14905 141 1e-28 seq2551 127 2e-24 >seq2788 Length=136445 Score = 217 bits (240), Expect = 2e-51 Identities = 345/492 (70%), Gaps = 2/492 (0%) Strand=Plus/Plus Query 128589 GGACTGAACAATGTGATGTAATCATTCTTAATCAAACGTTCAATCATCAGGTTATTAATC 128648 || ||||||| ||||||| | |||| || ||| | | |||||| || || ||| Sbjct 19220 GGGCTGAACAGAGTGATGTCGCCGCCTTTAACCAGACGCTGATACATCAGTTTGTTGATC 19279 Query 128649 TGAACACCATAATCTAAATGACGAATACGGTTTTCATCTACACCTTTGTTGTTCTTAAGT 128708 || || || || || | ||||||| ||||| | || ||||| |||||| || || Sbjct 19280 TGCACGCCGTAGTCCATGTGACGAACGCGGTTGCCTTCAACACCACGGTTGTTTTTCAGA 19339 Query 128709 ACGAGGAGGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAGTGTCGCCGCGCCACCA 128768 || || ||| |||||||||||| |||||| || || ||| |||| ||||| || || || Sbjct 19340 ACCAGCAGGCTTTCAACTTCCAGGTGCCACATCGGGTAGAACAGGGTCGCAGCACCGCCG 19399 Query 128769 CGGACTCCGCCTTGGGAGCAGGATTTAACTGCTGTTTGGAAGTGCTTCCAGAAAGGAATA 128828 || || ||||| || |||||||||||||| || || ||||||||||| |||| || ||| Sbjct 19400 CGCACGCCGCCCTGAGAGCAGGATTTAACCGCCGTCTGGAAGTGCTTATAGAACGGGATA 19459 Query 128829 ACTCCAGTATGTTTGACTTCACCGAATCCAATTTTTGAACCTTCTGCACGAATCATACCT 128888 || ||||| |||||||| | ||| ||| ||||| || || Sbjct 19460 CAGCCGGTATGGAATGCTTCACCGCCGCGAATCGGGCTACCCAGCGCACGGATGCGGCCA 19519 Query 128889 GCATTAATACCAATACCTGCACGCTTACTGATGTATTTTGTAATTGACGCAGCAGCT-TC 128947 || || || || |||||||| |||| | |||||| | || ||| | || | | Sbjct 19520 GCGTTGATGCCGATACCTGCGCGCTGTGAAACGTATTTCACGA-TGGCGCTGGAGGTCGC 19578 Query 128948 GTTAATTGAATTAAGACTATCACCGCCTTCAATAACCACGCATGAACTAAACTGACGTGT 129007 ||| || || | || || || |||| || || | ||||| || || ||||| || || Sbjct 19579 GTTGATGGAGTCCAGGCTGTCGCCGCACTCGATCAGTACGCAAGAGCTGAACTGGCGAGT 19638 Query 129008 CGGAGTACGAACACCAGACATAATTGGAGTTGGCAATGAAATCTTTTTAGTAGAAACTGC 129067 ||| || || || || ||||||||||| || |||| |||||||| || ||||| || Sbjct 19639 CGGGGTGCGCACGCCGGACATAATTGGCGTAGGCAGAGAAATCTTGAAGGTTGAAACCGC 19698 Query 129068 ATCATAGAAACG 129079 |||||||||||| Sbjct 19699 ATCATAGAAACG 19710 >seq14905 Length=119551 Score = 141 bits (156), Expect = 1e-28 Identities = 144/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 48816 GTGAAAGTACGAGCGATAACGTCGCGCTGCTGTTCCGACGTCAGGGAGTTGAAGCGTACC 48875 ||||||||||||| ||| ||||| |||||||||||| ||||| ||||| || || || Sbjct 42446 GTGAAAGTACGAGTGATCACGTCCTGCTGCTGTTCCGGCGTCAACGAGTTAAAACGCACG 42387 Query 48876 GCGTAGCCGGAAACACGAATGGTCAGCTGCGGATATTTTTCCGGATGCTCAACCGCGTCC 48935 ||||| || || ||||| || |||| ||| ||||| || || ||||| | | ||| || Sbjct 42386 GCGTACCCCGAGACACGGATAGTCAACTGAGGATACTTCTCAGGATGTTTTATCGCATCT 42327 Query 48936 AGCAGAGTTTCACGACGCAGCACGTTAACGTTCAGGTGCTGACCGCCTTCAATTTTTACC 48995 || || |||||||||| ||||||||||| || ||||| || ||||| | ||| Sbjct 42326 TCGAGCGTCTCACGACGCATGACGTTAACGTTAAGATGCTGCCCCCCTTCTACGCGAACC 42267 Query 48996 GTTGGCTG 49003 |||||||| Sbjct 42266 GTTGGCTG 42259 >seq2551 Length=53185 Score = 127 bits (140), Expect = 2e-24 Identities = 132/173 (76%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 48816 GTGAAAGTACGAGCGATAACGTCGCGCTGCTGTTCCGACGTCAGGGAGTTGAAGCGTACC 48875 || || ||||| | || ||||| |||||||||| || || ||||||||||||||| Sbjct 37103 GTAAAGGTACGGGTAATCACGTCCTGCTGCTGTTCTTTGGTTAGTGAGTTGAAGCGTACC 37044 Query 48876 GCGTAGCCGGAAACACGAATGGTCAGCTGCGGATATTTTTCCGGATGCTCAACCGCGTCC 48935 || ||||| ||||| || || |||||||| || |||| || |||| || | || ||| Sbjct 37043 GCATAGCCTGAAACGCGGATAGTCAGCTGAGGGAATTTCTCAGGATTTTCCATGGCCTCC 36984 Query 48936 AGCAGAGTTTCACGACGCAGCACGTTAACGTTCAGGTGCTGACCGCCTTCAAT 48988 ||||| | || || || |||||||||||||| |||||||||||||| || Sbjct 36983 AGCAGCATCTCGCGGTTCATTACGTTAACGTTCAGATGCTGACCGCCTTCGAT 36931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531148816177680