Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_028695.2 Length=40491 Score E Sequences producing significant alignments: (Bits) Value seq139038 340 5e-89 >seq139038 Length=11747 Score = 340 bits (376), Expect = 5e-89 Identities = 888/1342 (66%), Gaps = 88/1342 (7%) Strand=Plus/Minus Query 28069 ACAACCTGGTCTAGTGTATCAGCAGCCTGAATCTGATAAACAAATACTGGTCTGGGGTGG 28128 || || | ||| || ||| | |||||||| ||| | ||||| ||||| | || ||| Sbjct 10831 ACGACTTCGTCGAGCGTACCGGCAGCCTGTATCAAGAACACAAAAACTGGCCGTGGATGG 10772 Query 28129 TTAGCTTGCATTTGGCGTACAGGCCCAATACGTTCGATAACCTGCGCATAGTGCTCGTAA 28188 || || ||| || || ||||| || ||||||| | ||||| ||||| || | Sbjct 10771 CCCGCCTGATGTTGTCGCACTGGCCCTATTCGTTCGACGATCTGCGAATAGTATTCCAAG 10712 Query 28189 TTCCACGTCATCGAATAGAA--GGCCAGGTGACACCCGCCGTCCTGAAGGTTGAGGCCAT 28246 |||||||| ||| | || || |||||| || |||||||| || | ||| ||||| | Sbjct 10711 TTCCACGT-ATC-ACTAAAAACGGCCAGATGGTGTCCGCCGTCTTGCAAGTTAAGGCCGT 10654 Query 28247 GGCCGGCTGATGCCGGGTGAACCAGCAGCATAGGAATCTCGCCACGGTTCCAGGCGTCAA 28306 | ||||| ||||||||| ||| |||||||| |||| || ||||||| || | Sbjct 10653 GCCCGGCGCTGGCCGGGTGAGCCAATAGCATAGGGATCTTCCCTTGGTTCCACAGCTCGA 10594 Query 28307 TCTGGTCGTTGCCTCTCTTACCCTTCGCCAGCGCTACGGCTTCCGGGAATTTCTTCAGGA 28366 | | | | | | | ||||| || |||| || ||||| || |||||||||||||||| Sbjct 10593 TATTGCGGGTTGCGGTTTTACCTTTGCCCAGTGCCACGGCCTCGGGGAATTTCTTCAGGA 10534 Query 28367 TGCGGGCGCGGTCATGCTGGAACTGGTAGGCCACCAGGAGCGGTGCGCCGTTAAGCTCGT 28426 |||| | |||||||| | | | |||||||| | || || || ||||| ||||| | Sbjct 10533 TGCGTTCCCGGTCATGGCGATAGTAATAGGCCACTAACAGTGGCGCACCGTTGAGCTCTT 10474 Query 28427 CATATATCGAGTCCAAGGCCTCCAGCTTCGCGTTGTGGATAGCTTCCCACTCTTTGGTTG 28486 |||| || || || | || ||||||||| |||| || ||| ||||| || || | Sbjct 10473 CATAAATAGACTCGAGCGCGTCCAGCTTCTCGTTATGAATAAGCTCCCAGTCACCTGTCG 10414 Query 28487 GCTCTCCGTCGTCGCCCGTTGTATAGACCGCGCCGCTGGCTATTTGCAGACATTTCTGTG 28546 |||| |||||| || | || ||| || || ||| ||||| |||| ||||| | Sbjct 10413 GCTCACCGTCGGCGTCGGTCACATAAACGGCACCGGAAGCTATCTGCAAGCATTTAGCCG 10354 Query 28547 TGCGTGCTGCCGCGTTCGCCGCTTCCACCTCTCCGGCTTCGAGCTGGGCGAAAAGTTTCT 28606 | || ||||| || | || || || | || | ||||| | ||| || || Sbjct 10353 TCTTGGCCGCCGCATTAACGGCGTCGACTTTCCCCTCATCGAGATCGGCCTTCAGCAGCT 10294 Query 28607 TCTCCATCTGGTCATAGGCTTTACGGGCCTTCGGCGGCAGCGGGACAACTACCGGAACCA 28666 || |||| | ||||||| |||| | || || | ||||| ||| |||||| | Sbjct 10293 TCACCATATCGTCATAGACTTTTTGCGCTTTACGGGGCAGGTAGACCGGACGCGGAACTA 10234 Query 28667 CAACCGGCTTATCACAACCAAAGTATTCCGCCGCGTCCACGGTAAGAGATATATCAGC-- 28724 ||| || || |||||||| ||||||| | |||||| || || || || || || || Sbjct 10233 CAATCGCCTCTTCACAACCGAAGTATTTAGACGCGTCTACCGTCAGCGAGATGTCGGCCA 10174 Query 28725 ----------TATGCGCTGGT-GAATCTCAGTGTCCGCGCCAGAGCGA-GGCTTATATGA 28772 ||||||||| | ||||| | | | || | | ||| ||| || Sbjct 10173 ATGCACGATGTATGCGCTGTTCTGATCTCGGCATGGGTATGAGGTCTACGGCGTATTTGC 10114 Query 28773 TTTAGCGGCATGATGCGCGCCCTCCTGAACACTGACGAACCAACGGTCGGTGAATG-ACT 28831 | | |||| | || | || || | ||| | ||||| |||| | | Sbjct 10113 TGT--CGGCTTTTTG-----CTTC--GA-----GGTGAAATACCGGTCTTTGAACGCGGT 10068 Query 28832 GGTAGCTGCTGCCGAGGCGCTGGCCGGCGTCTAGGAACCAGCACTGGCCCCACAGGTCCT 28891 | || || |||| || ||| ||| || |||| |||||| ||| ||||| || |||| Sbjct 10067 GAAAGATG-TGCCCAGACGCGCGCCAGCATCTATAAACCAGTTCTGACCCCAAAGATCCT 10009 Query 28892 TCAGGCCGTTCGGCGCGGGCGTACCGGTCAGATT------------GA---TGAAGCGCT 28936 | || ||||| | ||||||||||| || | || || ||| || || Sbjct 10008 TGAGCCCGTTTGTAGCGGGCGTACCCGTTAAGTTCCACCAATACCGGACTTTGACGC-CT 9950 Query 28937 TAATCTTCTTGTGCGCCACCTTGCCGAGGGCCCGGGCGCGCTTGCTACCGCCTTTACTAC 28996 | | ||||| || || | ||||| || || |||||||| || ||||| | | Sbjct 9949 T--TTTTCTTATGGGCGATTTTGCCAAGAGCACGGGCGCGTTTAGACCCGCCACGCGTTC 9892 Query 28997 GGAACGACTTCAGCTTGGTCGATTCATCGGCAACGATGACAGTGAACGGCCAGCGGTCGC 29056 |||||||||| ||||| |||||||| |||||||||| || || || ||||| ||| | Sbjct 9891 GGAACGACTTAAGCTTTGTCGATTCGTCGGCAACGACAACGGTAAAGGGCCAATCGTCAC 9832 Query 29057 CCCAGAACTCGACGAGCCACTCCAGAATGTCGTAGTTGCAGCACACCACGTTAGCGT--- 29113 | | | | || | ||| || || |||||||| || |||||||||||| | | Sbjct 9831 CAAGGTATTGCACCAACCATTCTGCGATATCGTAGTTACAACACACCACGTTATCCTTAC 9772 Query 29114 CGTCGTTCAACATCACATCCTCCCGATACTGGCGGCTG--CCGGTGCCGTCGACGACGCG 29171 || || | || | | |||||| ||| ||| ||||||||||||||||| | Sbjct 9771 CGGCG------AGTACTTGTTGCCGATA--GGCTACTGGCCCGGTGCCGTCGACGACTTG 9720 Query 29172 CAGTGCCGGGAATTGCCACTTAACCTGTTCGGCGGGCCATGTGCCGGACGCAACGCGCAG 29231 |||||| || || ||| || | || || ||||||| || |||||||||||||||| Sbjct 9719 CAGTGCGGGAAACCCCCATTTGTCTTGCTCTCCGGGCCACGTCGCGGACGCAACGCGCAG 9660 Query 29232 TGGGGCCAGCACCAGCACCCGGTCGCCACACCAGTTCTCCTGGTCCC-AGTCGTCCAGGA 29290 || || ||||| || || || || || ||| ||| ||| || Sbjct 9659 CGGCGCGAGCACAAGGACGCGATC----------TT----TGGGCCCGAGT--TC----- 9621 Query 29291 TGCCGGTCTGGAACATCTTGTTCAGCGCCCACATCGTCGCGCCGGTCTTCCCGGAACCCA 29350 |||| ||| |||||||| ||| |||||||||| || |||||||| || || ||||| Sbjct 9620 -GCCGCTCTTGAACATCTGGTTTAGCGCCCACAGTGTGGCGCCGGTTTTGCCACTACCCA 9562 Query 29351 TCGTCGCGAATACGTTGCAACG 29372 |||| ||| ||| ||||| || Sbjct 9561 TCGTGGCGTATAGATTGCAGCG 9540 Score = 176 bits (194), Expect = 1e-39 Identities = 487/740 (66%), Gaps = 5/740 (1%) Strand=Plus/Minus Query 32193 AATAGCCACGGGCAAGGTTCTGCGGCTGGAAACCTTTTCCGGCAAATCGTAAGGTTCTCG 32252 |||| ||||| ||||| |||||||| || || ||| || || ||| || ||||| | Sbjct 7734 AATACCCACGTGCAAGATTCTGCGGTTGAAAGCCTCGCCCAGCCCATCTTAGGGTTCGCT 7675 Query 32253 ACGCCCCGCCATATTGCAGGCACCCGCGACGGCGGCCGTCGCCAGACAGGCCGAGCAGGA 32312 || || |||||||| || || || || || ||||||||| | ||||| || | | Sbjct 7674 TGGCGCCACCATATTGAAGACAACCCCGGCGCCGGCCGTCGGCGGACAGACCCTCGATAA 7615 Query 32313 GCGGGTTATATTTGGTTGATGCCGTGGA-GCTGGCTCCGAGGCGCATTTCTATAATTGTC 32371 | || || ||||| || |||||||| || |||| | |||||||||||||| || || Sbjct 7614 GTGGCTTGTATTTTGTCGATGCCGTTGACGCTG-CGCCGAGGCGCATTTCAATGATAACG 7556 Query 32372 CGGGCGTCATCCGGCAGGTCATCGTCGGCCAGCAGGTCGTTAAGCGTTGATTTCTGCGCG 32431 ||||| || || || || || || | |||||||| | | ||||| || Sbjct 7555 CGGGCTTCGTCTGGGAGATCTGGATCTTCTAGCAGGTCCAGCAAGACCGCCTTCTGGGCA 7496 Query 32432 TTGAGAATCTCGTGCGCCGGGGCCAGGTCGCGCAGTGTTGGCAGGAACGCGGCACCGGTC 32491 || | | |||||||||||| || |||||| || |||||||| | |||||||| Sbjct 7495 TTCGGTACGGTGTGCGCCGGGGCTAGACCGCGCAATGCCGGCAGGAAATCCGCACCGGTA 7436 Query 32492 AGGCCAGCGCCCCATTTCTCGTTTGCTTCAGCTTGTAGTTCTATTTTATGCTGTTTAACA 32551 || || | ||| |||| | | || || |||| |||||| | ||||||| | | Sbjct 7435 AGACCTGAGCCGTATTTGGCCATAGCCTCGGCTTTAAGTTCTTTCTTATGCTCCTGTATG 7376 Query 32552 GCATCAATTGCTGCGTTG-GCCAGGGCAGTGTCGACGAAAAATCCACGGTCGTTGATGCG 32610 || | | || || | || || | || |||||| |||| || ||||| || ||| Sbjct 7375 GCCTGTACCGC-GCAACGAGCAAGCTCGGTATCGACGTAAAACCCTCGGTCATTAATGAT 7317 Query 32611 CTGGTCGATTGCCAGCACCGTGTTTTCAAATTCGATGTTGCCCCAGTCCGGCATGGCGTG 32670 |||||| | | | | | |||||||| || || | ||| |||| || Sbjct 7316 CTGGTCAAGCACTAAGATCCGGTTTTCAATCTCCGTGGAGTTCCATGTTGGCAGTCGGTA 7257 Query 32671 GAATACCCCGCGCATTGCCGTAATATCCGAGCGCGCGTATTCGATGAACTCGGCCCATTC 32730 ||| || | ||||| | || ||||| || ||||| || | || |||||| Sbjct 7256 GAAGGCCTCACGCATAGAAGTGATATCGCGCCGTGCGTAGTCTACAAAGCGTTTCCATTC 7197 Query 32731 CGCCGGGTGCGTTTCCCGTGAGTACCGGCGCACCTTGTAGTTTTTCGGTGTCGGCTTACA 32790 | |||||||| | | || ||| || || | |||||| || || || || || ||||| Sbjct 7196 TTCGGGGTGCGTCTGCTTTGTGTAGCGCCGTATCTTGTAATTCTTAGGCGTGGGTTTACA 7137 Query 32791 GAAACGCTGAATAAGCGCCTTGCCACGCTTGTCCTTCGCCAGACTGTCGTCGATTTGCAA 32850 ||| ||||| || | |||||| || ||| || || || || || | | | Sbjct 7136 GAAGCGCTGGATCAACGCCTTACCCGCCTTATCTTTGGCGAGCTCCACGGGAACGTTTAG 7077 Query 32851 CACTTCGCACTGCATAGCCAGACTACCCGGCAGCGAGTGGCGGAACGCCATTACCATCGT 32910 ||||||||| | | | || |||||||| || || ||| | ||| ||||| || Sbjct 7076 CACTTCGCAGAGTTTCTCGAGCGAACCCGGCAACGCGTATCGGTAGGCCTCGACCATTGT 7017 Query 32911 GTCGAGGATATCGCGCGGGT 32930 ||||| ||| | || ||||| Sbjct 7016 GTCGATGATGT-GCTCGGGT 6998 Score = 120 bits (132), Expect = 8e-23 Identities = 419/642 (65%), Gaps = 34/642 (5%) Strand=Plus/Minus Query 38660 TGATGGACGAGCCTTGCGCGCTGTTCACCAAACGCGACCCGATTATCGATGGCCTGTATA 38719 ||||| | || || | || ||||||| || || ||||| || ||||| | | | Sbjct 1254 TGATGAATGAACCGTCTGCCTTGTTCACTAAGAACGTGCCGATCATTGATGGGTTTTTAA 1195 Query 38720 ACTTCAAATCAACCTTCGAGCTGGTGGGTGAGTCAAACATCGGGAAGTCGTTCTTCCTGC 38779 ||||| ||| || | | || ||| || |||||||| || || ||||||||| | | Sbjct 1194 ACTTCCGATCGACGTGGTACGCGGCGGGCGAATCAAACATAGGCAAATCGTTCTTCGTCC 1135 Query 38780 TCGGGCAAATGGCTTGCGCCGCCGCGGGCATTCCGTTTGCTGGCGCGAAAGTCATCAAGT 38839 | ||| ||||| | |||||| ||||| || ||||| || ||| || ||||| | Sbjct 1134 TTGGGGCTATGGCCGCTGTCGCCGCTGGCATACCTTTTGCGGGGCAGAAGGTTATCAAAT 1075 Query 38840 CGCACAACTTCTATTTCGACGCCGAGGGCGGC---AGCACA-ACGGAAGACCGTAAGCAG 38895 | || ||||||| |||| ||||| || ||| || | || ||| || ||| Sbjct 1074 CTCATTGCTTCTATCTCGATGCCGAAGGTGGCGAGAGTTCTCACTTAAGG----AAACAG 1019 Query 38896 GCGCTACAGATTACCTACAGCGATAACCTGGACTGGCTGCACATTATAGACCT-GCAACA 38954 ||||| ||||| | || ||| |||| | ||||||||||| | ||||| | | Sbjct 1018 GCGCTCCAGATAAAGTATCAAGATGACCTCAATTGGCTGCACATAGTCGACCTCTCGGTA 959 Query 38955 TGAAGGGTGGGACATC---ACATCGACCGCCGGGCGCAAATCCATCATCCGCCATATCCG 39011 | || ||||||||| ||| ||||| | |||| | | | | | ||||| Sbjct 958 T-TGGGCTGGGACATCTCAACAAAGACCGGCAAGCGC---CGGGTGACCGACTACATCCG 903 Query 39012 CACGGTGGCCGGTGACGACCCAGTCGGCCTGGTGGCATTCGACTCCCTGAACCAGTCTGT 39071 |||| | ||| |||| || || || ||| || | || |||||||| || |||||| || | Sbjct 902 CACGATAGCCCGTGAAGATCCTGTTGGCATGATAGCCTTCGACTCTCTAAACCAGACTAT 843 Query 39072 TTCTTTA---TCGGCC-AC-----GCCGTTCGACGAGAACTCTTCCGCGGATATGGGCGT 39122 ||||| || || || ||||||||| ||||| | || |||||||| | Sbjct 842 GGCTTTACGCTCTTCCGACCTTCGGCCGTTCGATGAGAATAGCGCGGCAGATATGGGGGA 783 Query 39123 TGTCGCGTCAGCGCTGAAGGCGATTGCCGATGAAACCGGTGCGTGCGCAGGCGTTGTCCA 39182 || | || ||||| | ||| | | |||||| | | || ||||| || || Sbjct 782 AGTGGTACGCGCCCTGAAAGAGATCTCTATCGCAACCGGCGGATCGGCTGGCGTCGTTCA 723 Query 39183 CCACCCCGCCAAATCAGAGAAAGGCACCCGCCGCGTTGGTCGTGGCTCCGGCGCGCTGCA 39242 ||||| || || || | ||| | ||| || || || |||||||||||||| Sbjct 722 TCACCCGGCAAA---AGGGGGTGGCGCGTCACGCTCTGCGCGCGGTTCCGGCGCGCTGCA 666 Query 39243 CGGCGCTGTCGACTTCG---TTTACTTCATCGAACAGCCGGA 39281 || || || || |||| ||| || ||||| ||||| || Sbjct 665 TGGTGCAGTGGA-TTCGGCCTTT--TTTATCGAGCAGCCTGA 627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129235856542156