Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_028698.1 Length=41868 Score E Sequences producing significant alignments: (Bits) Value seq139038 194 4e-45 >seq139038 Length=11747 Score = 194 bits (214), Expect = 4e-45 Identities = 686/1061 (65%), Gaps = 53/1061 (5%) Strand=Plus/Plus Query 4815 TGGTAGGCCAAAACTTCCTTATGTTCGACCGACCAGTTATTAAGCATTGCTGGGGATTCG 4874 |||| |||||||||||| | ||||||||| |||| || | | | || ||||| ||| Sbjct 6931 TGGTGGGCCAAAACTTCTTAATGTTCGACAGACCTGTGCTGTCGAACTGTTGGGGTATCG 6990 Query 4875 AACTCCTGGTAGAAAACATTATAGACACTATGATAGTCGCGTTCCGACATGCCCTCCCAG 4934 ||| || |||| || ||||| ||| | | || | |||| | || | || | Sbjct 6991 CGATCCCACCCGAGCACATCATCGACACAATGGTCGAGGCCTACCGATACGCGTTGCCGG 7050 Query 4935 GTTCACTGGCTGCGCTGTGTGAGGTTTTAAACATTGACGCA-AGCATGGCTAAGGATAAA 4993 |||| || | || || || || ||||| || || ||| | || || ||||| Sbjct 7051 GTTCGCTCGAGAAACTCTGCGAAGTGCTAAACGTTCCCGTGGAGC-TCGCCAAAGATAAG 7109 Query 4994 CGCGGTAAGGCGCTTATACAGCGATTCAGTAAGCCTACGCCTAAGAACTATAAGATTCGA 5053 ||||||||| | || ||||| ||| |||| || ||||||||||| || ||||| || Sbjct 7110 GCGGGTAAGGCGTTGATCCAGCGCTTCTGTAAACCCACGCCTAAGAATTACAAGATACGG 7169 Query 5054 CGCTACACCGCCGATACCCACCCAAAAGAGTGGGCAGAATTTATCGCATACGCAAAAAGC 5113 |||||||| | || ||||| |||| ||| | ||| | | |||||| || Sbjct 7170 CGCTACACAAAGCAGACGCACCCCGAAGAATGGAAACGCTTTGTAGACTACGCACGGCGC 7229 Query 5114 GACATTACGTCCATGCGTGAAGTGTATAAGAAAATGCCTAAGTGGGGTAATT---CTGAG 5170 || || || || |||||||| | | | | |||| | ||| || | | ||| Sbjct 7230 GATATCACTTCTATGCGTGAGGCCTTCTACCGACTGCCAACATGG---AACTCCACGGAG 7286 Query 5171 TTCGAAGACCGCGTGCTTA--GCTTAGACCAGGTTATTAATGACCGTGGATTTAAGGTTG 5228 | ||| |||| | |||| |||| |||||| | ||||||||||| || ||| | || | Sbjct 7287 ATTGAAAACCG-GATCTTAGTGCTT-GACCAGATCATTAATGACCGAGGGTTTTACGTCG 7344 Query 5229 ATGTTGCCCTTGCTGAAGCCGCGATTGAAGCTGT-CACGCGTCACAAGGAAGAGTTACAG 5287 || | |||||| |||| | | || | || | | || ||| |||| | | Sbjct 7345 ATACCGAGCTTGCTCGTTGCGCGGTACAGGCCATACAGGAG-CATAAGAAAGAACTTAAA 7403 Query 5288 GAAGAAGCCCAACGTAAATACGGC---GGTTCACTGACAGGCAAATACTTCCTGCCTATT 5344 | || || ||||||||| ||| || || || | |||||||| Sbjct 7404 GCCGAGGCTATGGCCAAATACGGCTCAGGT---CTTACCGGTGCGGATTTCCTGCCGGCA 7460 Query 5345 TTACAGGAACTAGCGCCGGCGCACCGCATACATAATGCGCAGAAGTCAACGCTAAACGAC 5404 || | | ||||| ||||||||| | ||| ||||| |||||| | | ||| Sbjct 7461 TTGCGCGGTCTAGCCCCGGCGCACACCGTACCGAATGCCCAGAAGGCGGTCTTGCTGGAC 7520 Query 5405 CTGCTGGCGGATGAGGATTTACCAGACGATGCGCGCACCATCATTGAGATGCGTCTGGGG 5464 ||||| | ||| ||| | |||||||| || ||| |||||||| ||||| || || Sbjct 7521 CTGCTAGAAGATCCAGATCTCCCAGACGAAGCCCGCGTTATCATTGAAATGCGCCTCGGC 7580 Query 5465 GCCGCGTCTACCGCATCGACGAAATACGCGCCGTTGCTGTTAGGCCGTTCTTCAGATGAC 5524 || ||||| || |||||||| |||||| ||| | | || | || | || | | Sbjct 7581 GCAGCGTCAACGGCATCGACAAAATACAAGCCACTTATCGAGGGTCTGTCCGCCGACGGC 7640 Query 5525 CGCCGCCGTGGTTGCCTGCAATACGGAGGAGCGAAGCGAACATTGCGGTGGGCCGGGAAA 5584 || ||||| ||||| || ||||| || || || |||||||| | | ||||| ||| | Sbjct 7641 CGGCGCCGGGGTTGTCTTCAATATGGTGGCGCCAAGCGAACCCTAAGATGGGCTGGGCGA 7700 Query 5585 GGTTTTCAGCCACAGAACCTGGCGCGCGGGTATTATCATGACGA-------------TG- 5630 || ||||| || ||||| || || || |||||||| || ||||| || Sbjct 7701 GGCTTTCAACCGCAGAATCTTGCACGTGGGTATTACCACGACGACCCAGAAAAGCCTTGG 7760 Query 5631 ---AACTGGATAG----------GGGTATTGCCGCGTTACTTAAAGGCCGTGCACACCGC 5677 || | | || | |||| | ||||| ||| || | | Sbjct 7761 CCCAAGTCAAAAGACTTGTCACTCGCGATTGAGTCACTACTTCGAGGTAAAGCGGAGAAC 7820 Query 5678 CGTTTTGATGTGGCCAAGCTAACAGCGTCTACCGTCCGAAGCTGCATTATT---CCGGAA 5734 | | ||| | ||||||||||| || || || |||||| || |||||| ||||| Sbjct 7821 TGCTACGATATCGCCAAGCTAACGGCATCGACGGTCCGATCTTGTATTATTGCAGCGGAA 7880 Query 5735 GCCGGGTGTAAATTTGTTGTTGCGGACTACTCTAACGTCGAAGGCCGTGGGCTTGCGTGG 5794 || | || || | |||||||| |||||| ||||||| || || |||||| | || ||| Sbjct 7881 GC--GATG-AAGCTGGTTGTTGCCGACTACGCTAACGTTGAGGGGCGTGGGTTGGCATGG 7937 Query 5795 CTGGCTGGTGAAGAAACCGCGCTTGATACGTTCCGCGCCGG 5835 || || |||||||| | | ||| || || ||||| ||||| Sbjct 7938 CTTGCAGGTGAAGAGTCTGTGCTCGAGACATTCCGTGCCGG 7978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133634980821160