Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_028773.1 Length=182145 Score E Sequences producing significant alignments: (Bits) Value seq2788 205 1e-47 seq14905 138 1e-27 seq2551 93.3 5e-14 >seq2788 Length=136445 Score = 205 bits (226), Expect = 1e-47 Identities = 303/428 (71%), Gaps = 6/428 (1%) Strand=Plus/Minus Query 18308 TGCCAACCCCAATTATGGCAGGCGTTCGCACCCCAACCCGCCAGTTCTCAAGCTGT---G 18364 |||| || ||||||||| | ||||| |||||||| || ||||||||| |||| | | Sbjct 19673 TGCCTACGCCAATTATGTCCGGCGTGCGCACCCCGACTCGCCAGTTC---AGCTCTTGCG 19617 Query 18365 TTAAGATTGAAGTCGGTGACAGCCTCGAATCAATTAACGAATCAGCCGCCGCAGTCGTAA 18424 | ||| || ||| |||||||| || || || |||| | || ||| |||| | Sbjct 19616 TACTGATCGAGTGCGGCGACAGCCTGGACTCCATCAACGCGACCTCCAGCGCCATCGTGA 19557 Query 18425 ATTATATTAGTAAACGCGCTGGTATCGGTATTAACGCTGGTCGAATTCGTGCGGAAGGAA 18484 | || || | ||||| |||||||| || |||||||| || || |||||| || | Sbjct 19556 AATACGTTTCACAGCGCGCAGGTATCGGCATCAACGCTGGCCGCATCCGTGCGCTGGGTA 19497 Query 18485 GTCAAGTTCGCTCTGGTGAAGTCAAACACACTGGTGTTATTCCATTCTGGAAACATTTCC 18544 | | ||||| ||||||| || || || ||| || |||| || || |||| Sbjct 19496 GCCCGATTCGCGGCGGTGAAGCATTCCATACCGGCTGTATCCCGTTCTATAAGCACTTCC 19437 Query 18545 AGACTGCTGTTAAATCGTGTTCACAAGGCGGTGTTCGTGGTGGTGCGGCAACTCTGTATT 18604 |||| || |||||||| || || || ||||| || || || ||||| || || |||| | Sbjct 19436 AGACGGCGGTTAAATCCTGCTCTCAGGGCGGCGTGCGCGGCGGTGCTGCGACCCTGTTCT 19377 Query 18605 ATCCTATGTGGCATCTTGAATTCGAAAAGCTGATTGTTCTGAAAAATAACAAAGGTGTTG 18664 | || |||||||| || ||| | |||| ||| | ||||||||||| ||| ||||||| Sbjct 19376 ACCCGATGTGGCACCTGGAAGTTGAAAGCCTGCTGGTTCTGAAAAACAACCGTGGTGTTG 19317 Query 18665 ATGAAAACCGCATTCGTCAGCTTGATTATGGTCTACAAATCAATAAACTGATGTTCGAAC 18724 | | |||||| ||||||| | || || || | || ||||| |||||||||| | | Sbjct 19316 AAGGCAACCGCGTTCGTCACATGGACTACGGCGTGCAGATCAACAAACTGATGTATCAGC 19257 Query 18725 GTTTGGTT 18732 || ||||| Sbjct 19256 GTCTGGTT 19249 Score = 129 bits (142), Expect = 7e-25 Identities = 230/333 (69%), Gaps = 2/333 (1%) Strand=Plus/Minus Query 20082 CAGAAACATGAAATGTTCGAAAACTTAATTGAAAAGCAGTTGAGTTTCTTCTGGCGTCCT 20141 |||||| ||||||| |||||||| | || ||||||||| || |||||||||||||| Sbjct 17796 CAGAAATATGAAATCTTCGAAAAACTGATCGAAAAGCAGCTGTCCTTCTTCTGGCGTCCG 17737 Query 20142 GAAGAGGTTGACGTAACTCGTGATAAGATCGATTATGATAATTTACCAGAACATGAAAAA 20201 ||||| |||||||| | ||||| ||||| | | | | || || ||||||||| Sbjct 17736 GAAGAAGTTGACGTTGCCCGTGACCGTATCGACTTCCAGGGTCTGCCGGAGCATGAAAAA 17677 Query 20202 CATATCTTTACTTC-CAATTTGAAGTATCAGAGCTTACTCGATACCGTTCAGGGACGTGC 20260 || || ||| || ||| |||||||||||| | || || | ||||||| ||| Sbjct 17676 CACAT-TTTCCTGAGCAACCTGAAGTATCAGACGCTGCTGGACTCGATTCAGGGCCGTAG 17618 Query 20261 TCCTAACACTGCTTTTATGTCCATCGTATCTGATGTAACACTTGACACATGGATTCCTAC 20320 |||||| || | || | | | || | | ||||| || ||| || || Sbjct 17617 CCCTAACGTGGCGCTACTGCCGCTGATCTCCATTCCAGAGCTTGAGACCTGGGTTGAGAC 17558 Query 20321 CTGGGCGTTCTCGGAGACAATCCACAGTCGTTCTTATACACACATTATGCGCAACGTGTA 20380 |||||||||||| ||||| |||||| || || || || || ||||| || || | Sbjct 17557 CTGGGCGTTCTCCGAGACTATCCACTCACGCTCGTACACGCATATTATTCGTAATATCGT 17498 Query 20381 CGAAGATCCGTCCAAGATCTTTGACGAAATCGT 20413 | | |||||||| | | |||||||| ||||| Sbjct 17497 CAACGATCCGTCACTGGTGTTTGACGATATCGT 17465 Score = 98.7 bits (108), Expect = 1e-15 Identities = 133/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 19468 GACTGGGAAGCGCTTCGTGCCGACATCATGAAATATGGTCTTCGTAACTCTACGTTGTCA 19527 |||||||||||||| || ||| ||| | | | || || |||||||| ||| |||| Sbjct 18432 GACTGGGAAGCGCTGCGCGCCAGCATTAAAGAGCACGGCCTGCGTAACTCCACGCTGTCT 18373 Query 19528 GCGCTGATGCCTTGTGAATCAAGTTCACAGATCACCAACTCCACGAACGGTATCGAGCCG 19587 ||||||||||| | |||| | ||| ||||| | ||| |||| |||||||| || || Sbjct 18372 GCGCTGATGCCGTCTGAAACCTCTTCGCAGATTTCAAACGCCACCAACGGTATTGAACCA 18313 Query 19588 CCTCGTCAGTTGC-TGAGTGTAAAACAGTCTAAAGACGGTGTACTGAATCAGCTTGTTCC 19646 || || | | | |||| | || ||||||||||||| | ||| |||| |||| || Sbjct 18312 CCGCG-CGGCCACGTGAGCATCAAGGCGTCTAAAGACGGTATCCTGCGTCAGGTTGTGCC 18254 Query 19647 TGA 19649 ||| Sbjct 18253 TGA 18251 >seq14905 Length=119551 Score = 138 bits (152), Expect = 1e-27 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 125477 GTTCGCATTGAAGGCGGTCAGCATCTTAATGTCAATGTTCTGAATCGTGAAACGCTTCAA 125536 |||||| | ||||| || ||||||||||| || || || || |||||| ||||| || Sbjct 42268 GTTCGCGTAGAAGGGGGGCAGCATCTTAACGTTAACGTCATGCGTCGTGAGACGCTCGAA 42327 Query 125537 GATGCAGTAAAACATCCTGAAAAATATCCTCAACTGACCATTCGTGTTTCTGGTTATGCA 125596 ||||| ||||||||||||| || |||||||| |||| || ||||| || || || || Sbjct 42328 GATGCGATAAAACATCCTGAGAAGTATCCTCAGTTGACTATCCGTGTCTCGGGGTACGCC 42387 Query 125597 GTTCGTTTTAATGCATTGACTCGCGAACAGCAGTTGGACGTTATCAATCGCACGTTTAC 125655 || |||||||| | ||||| | ||||||||| |||||| |||| ||| || || || Sbjct 42388 GTGCGTTTTAACTCGTTGACGCCGGAACAGCAGCAGGACGTGATCACTCGTACTTTCAC 42446 >seq2551 Length=53185 Score = 93.3 bits (102), Expect = 5e-14 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 125483 ATTGAAGGCGGTCAGCATCTTAATGTCAATGTTCTGAATCGTGAAACGCTTCAAGATGCA 125542 || ||||||||||||||||| || || || || |||| || || | ||| | || || Sbjct 36931 ATCGAAGGCGGTCAGCATCTGAACGTTAACGTAATGAACCGCGAGATGCTGCTGGAGGCC 36990 Query 125543 GTAAAACATCCTGAAAAATATCCTCAACTGACCATTCGTGTTTCTGGTTATGCAGTTCGT 125602 | || ||||||| |||| ||||| ||||| || || ||||| || ||||| || || Sbjct 36991 ATGGAAAATCCTGAGAAATTCCCTCAGCTGACTATCCGCGTTTCAGGCTATGCGGTACGC 37050 Query 125603 TTTAATGCATTGACTCGCGAACAGCAGTTGGACGTTATCAATCGCACGTTTACGGAAGCT 125662 || || || | || ||||||||| |||||| || | || || ||||| || | Sbjct 37051 TTCAACTCACTAACCAAAGAACAGCAGCAGGACGTGATTACCCGTACCTTTACTAAAACG 37110 Query 125663 ATGTAA 125668 ||||| Sbjct 37111 CTGTAA 37116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 581723161126800