Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_028780.1 Length=167124 Score E Sequences producing significant alignments: (Bits) Value seq14905 154 2e-32 seq2788 134 1e-26 seq2551 91.5 2e-13 >seq14905 Length=119551 Score = 154 bits (170), Expect = 2e-32 Identities = 144/183 (79%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 101919 GAAGGTGGTCAACACCTGAACGTTAACGTTTTGCGTCGTGAAACTCTGGAAGATGCAGTT 101978 ||||| || || || || ||||||||||| |||||||||| || || |||||||| | Sbjct 42277 GAAGGGGGGCAGCATCTTAACGTTAACGTCATGCGTCGTGAGACGCTCGAAGATGCGATA 42336 Query 101979 AAGCATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTT 102038 || ||||| || || ||||| ||| |||| |||||||| || || || || || || ||| Sbjct 42337 AAACATCCTGAGAAGTATCCTCAGTTGACTATCCGTGTCTCGGGGTACGCCGTGCGTTTT 42396 Query 102039 AACTCTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGTACCTTCACCGAGAGTTTG 102098 ||||| |||| ||||||||||||| ||||| ||| ||||||| ||||| |||| || Sbjct 42397 AACTCGTTGACGCCGGAACAGCAGCAGGACGTGATCACTCGTACTTTCACTCAGAGCCTG 42456 Query 102099 TAA 102101 ||| Sbjct 42457 TAA 42459 >seq2788 Length=136445 Score = 134 bits (148), Expect = 1e-26 Identities = 325/492 (66%), Gaps = 0/492 (0%) Strand=Plus/Minus Query 22764 CGTTTTTATGAAGCAGTATCTACTCGACAGATTTCATTGCCAACTCCTATTATGGCTGGT 22823 ||||| ||||| || || || || ||||||| |||| || || |||||| | || Sbjct 19710 CGTTTCTATGATGCGGTTTCAACCTTCAAGATTTCTCTGCCTACGCCAATTATGTCCGGC 19651 Query 22824 TGTCGTACTCCGACTCGACAGTTTAGTTCATGCGTTGTTATTGAGGCAGGTGATTCATTA 22883 || || |||||||| ||||| || || ||||| | || ||| || || | Sbjct 19650 GTGCGCACCCCGACTCGCCAGTTCAGCTCTTGCGTACTGATCGAGTGCGGCGACAGCCTG 19591 Query 22884 AAGTCTATCAATAAGGCTTCCGCTTCAATTGTTGAATATATCTCTAAACGCGCTGGAATT 22943 | || ||||| | | ||| | || || |||| | || | ||||| || || Sbjct 19590 GACTCCATCAACGCGACCTCCAGCGCCATCGTGAAATACGTTTCACAGCGCGCAGGTATC 19531 Query 22944 GGTATTAACGTTGGTATGATTCGTGCCGAAGGTTCTAAGATTGGCATGGGTGAAGTACGC 23003 || || |||| ||| || ||||| ||| |||| || ||||||| | | Sbjct 19530 GGCATCAACGCTGGCCGCATCCGTGCGCTGGGTAGCCCGATTCGCGGCGGTGAAGCATTC 19471 Query 23004 CATACTGGTGTTATTCCTTTTTGGAAACATTTTCAGACTGCTGTTAAATCATGTTCACAG 23063 ||||| || ||| || || | || || || ||||| || |||||||| || || ||| Sbjct 19470 CATACCGGCTGTATCCCGTTCTATAAGCACTTCCAGACGGCGGTTAAATCCTGCTCTCAG 19411 Query 23064 GGCGGAATTCGTGGTGGCGCTGCTACTGCTTATTATCCTATTTGGCATTTGGAAGTTGAA 23123 ||||| | || || || ||||| || | || || || ||||| ||||||||||| Sbjct 19410 GGCGGCGTGCGCGGCGGTGCTGCGACCCTGTTCTACCCGATGTGGCACCTGGAAGTTGAA 19351 Query 23124 AATCTTCTCGTTTTGAAAAATAACAAAGGTGTAGAAGAAAACCGCATTCGTCATATGGAT 23183 | || || ||| ||||||| ||| ||||| |||| |||||| ||||||| ||||| Sbjct 19350 AGCCTGCTGGTTCTGAAAAACAACCGTGGTGTTGAAGGCAACCGCGTTCGTCACATGGAC 19291 Query 23184 TATGGTGTTCAACTGAATGATCTAATGATGGAACGTTTTGGAAAGAACGACTACATTACT 23243 || || || || | || | || ||| | ||| | | || || | |||| ||| Sbjct 19290 TACGGCGTGCAGATCAACAAACTGATGTATCAGCGTCTGGTTAAAGGCGGCGACATCACT 19231 Query 23244 TTGTTCAGTCCG 23255 ||||||| ||| Sbjct 19230 CTGTTCAGCCCG 19219 >seq2551 Length=53185 Score = 91.5 bits (100), Expect = 2e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 101916 ATTGAAGGTGGTCAACACCTGAACGTTAACGTTTTGCGTCGTGAAACTCTGGAAGATGCA 101975 || ||||| ||||| || |||||||||||||| || || || | ||| || || Sbjct 36931 ATCGAAGGCGGTCAGCATCTGAACGTTAACGTAATGAACCGCGAGATGCTGCTGGAGGCC 36990 Query 101976 GTTAAGCATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGC 102035 | | |||| || |||| || |||||||| ||||| || || || ||||| || ||| Sbjct 36991 ATGGAAAATCCTGAGAAATTCCCTCAGCTGACTATCCGCGTTTCAGGCTATGCGGTACGC 37050 Query 102036 TTTAACTCTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGTACCTTCAC 102088 || ||||| || || |||||||||| ||||| || | |||||||| || Sbjct 37051 TTCAACTCACTAACCAAAGAACAGCAGCAGGACGTGATTACCCGTACCTTTAC 37103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 533739505525440