Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_028820.1 Length=162101 Score E Sequences producing significant alignments: (Bits) Value seq2788 219 4e-52 seq6040 111 2e-19 >seq2788 Length=136445 Score = 219 bits (242), Expect = 4e-52 Identities = 356/500 (71%), Gaps = 18/500 (4%) Strand=Plus/Plus Query 140122 GGGCTGAACAACGTGATGTAATCGTTTTTAATCAGACGTTCAATCATGAGGTCGTTAATT 140181 |||||||||| ||||||| || ||||| |||||| | | ||| || | ||| || Sbjct 19220 GGGCTGAACAGAGTGATGTCGCCGCCTTTAACCAGACGCTGATACATCAGTTTGTTGATC 19279 Query 140182 TGAACACCATAATCTAGGTGGCGAATACGGTTTTCATCAACACCTTTATTGTTCTTCAGT 140241 || || || || || | ||| |||| ||||| | |||||||| ||||| ||||| Sbjct 19280 TGCACGCCGTAGTCCATGTGACGAACGCGGTTGCCTTCAACACCACGGTTGTTTTTCAGA 19339 Query 140242 ACGAGCAGGTTTTCTACTTCAAGATGCCAAATCGGATAGTACAAAGTAGCTGCGCCACCG 140301 || |||||| |||| ||||| || ||||| ||||| ||| ||| || || || || ||| Sbjct 19340 ACCAGCAGGCTTTCAACTTCCAGGTGCCACATCGGGTAGAACAGGGTCGCAGCACCGCCG 19399 Query 140302 CGAATGCCGCCTTGAGAACAAGATTTAACAGAAG-CT--AAGTGAGTTTTCCAGAATGGA 140358 || | |||||| ||||| || |||||||| | | || ||||| | | |||| || Sbjct 19400 CGCACGCCGCCCTGAGAGCAGGATTTAACCGCCGTCTGGAAGTGCTTAT---AGAACGGG 19456 Query 140359 ATAACGCCTGTATGACGAA--CTTCACCAGCGCCAATCTTAGAACCTTCAGCACG-ATAC 140415 ||| ||| ||||| ||| ||||||| ||| |||| ||| ||||| || | Sbjct 19457 ATACAGCCGGTATG--GAATGCTTCACCGCCGCGAATCGGGCTACCCAGCGCACGGATGC 19514 Query 140416 ATTCCAGCGTTAACACCAATACCGGCACGTTTGCTGATA--TATTTGATGATTGCTTTGT 140473 |||||||| | || ||||| || || | ||| | ||||| | ||| || || Sbjct 19515 GG-CCAGCGTTGATGCCGATACCTGCGCGCTG--TGAAACGTATTTCACGATGGCGCTGG 19571 Query 140474 TTACTGCATTAATACTGTCAAGACTATCGCCGCCTTCAATAACAACGCAAGAACTGAACT 140533 || || || ||| || || ||||||| || || | |||||||| ||||||| Sbjct 19572 AGGTCGCGTTGATGGAGTCCAGGCTGTCGCCGCACTCGATCAGTACGCAAGAGCTGAACT 19631 Query 140534 GGCGAGTCGGAGTACGTACACCGGCCATAATTGGAGTAGGCAGAGAAATC-TGACGTTTA 140592 |||||||||| || || || |||| ||||||||| ||||||||||||||| ||| | || Sbjct 19632 GGCGAGTCGGGGTGCGCACGCCGGACATAATTGGCGTAGGCAGAGAAATCTTGAAGGTT- 19690 Query 140593 GATACGGCATTATAGAAACG 140612 || || |||| ||||||||| Sbjct 19691 GAAACCGCATCATAGAAACG 19710 >seq6040 Length=129903 Score = 111 bits (122), Expect = 2e-19 Identities = 73/81 (90%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 67174 AATTTGGTGGCCCTTACTGGATTTGAACCAGTGACCAATCGATTATGAGTCGACTGCTCT 67233 ||||||||||||| ||||||| |||||||||||||||| ||||||||||||| |||||| Sbjct 118356 AATTTGGTGGCCCCTACTGGACTTGAACCAGTGACCAAGCGATTATGAGTCGCGTGCTCT 118297 Query 67234 ATCCATCTGAGCTAAAGGGCC 67254 | ||| ||||||||| ||||| Sbjct 118296 AACCAACTGAGCTAAGGGGCC 118276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517693842647760