Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_028829.1 Length=248088 Score E Sequences producing significant alignments: (Bits) Value seq2788 159 5e-34 seq38357 104 4e-17 >seq2788 Length=136445 Score = 159 bits (176), Expect = 5e-34 Identities = 335/492 (68%), Gaps = 8/492 (2%) Strand=Plus/Plus Query 236197 GGACTGAATAGCGTGATGTAATCGTTATTCACAAGACGCTCAAGCATCAATCGACTGATT 236256 || ||||| || ||||||| || || || ||||||| | ||||| | |||| Sbjct 19220 GGGCTGAACAGAGTGATGTCGCCGCCTTTAACCAGACGCTGATACATCAGTTTGTTGATC 19279 Query 236257 GATACACTGTAGTCAAGATGACGAATACGGTTTTCTTCAACACCTTTGTTGTTCTTCAGA 236316 || | |||||| | ||||||| ||||| |||||||||| |||||| |||||| Sbjct 19280 TGCACGCCGTAGTCCATGTGACGAACGCGGTTGCCTTCAACACCACGGTTGTTTTTCAGA 19339 Query 236317 ACTAACAGTTTTTCAACTTCTAAGTGCCAAATCGGGTAAGTTAGAGTCGCAGCACCACCA 236376 || | ||| |||||||||| | |||||| |||||||| || ||||||||||| || Sbjct 19340 ACCAGCAGGCTTTCAACTTCCAGGTGCCACATCGGGTAGAACAGGGTCGCAGCACCGCCG 19399 Query 236377 CGTACACCACCTTGAGAACACGATTTAACCGCAGTTTGAAAGTGTTTCCAGAATGGAATT 236436 || || || || ||||| || ||||||||||| || || ||||| || |||| || | | Sbjct 19400 CGCACGCCGCCCTGAGAGCAGGATTTAACCGCCGTCTGGAAGTGCTTATAGAACGGGA-T 19458 Query 236437 ACA-CCAGTGTGACGAAT--CTCACCTGAACGAA-CGACTGCCCCTTCAGCACGAATCGC 236492 ||| || || || |||| ||||| |||| || ||| | ||||| || Sbjct 19459 ACAGCCGGTATG--GAATGCTTCACCGCCGCGAATCGGGCTACCCAGC-GCACGGATGCG 19515 Query 236493 ACCGCCATTCACACCGATACCTGCACGCTTACTAATGTAACTTACAATTGATTTAGCCAC 236552 || | || | ||||||||||| |||| || ||| | || || | | | Sbjct 19516 GCCAGCGTTGATGCCGATACCTGCGCGCTGTGAAACGTATTTCACGATGGCGCTGGAGGT 19575 Query 236553 TTCATTGATTGAATGCAAAGAGTCGCCTGATTCAATCTTAACACACGAACTAAACTGGCG 236612 | ||||| || | || |||||| | || ||| || || || || |||||||| Sbjct 19576 CGCGTTGATGGAGTCCAGGCTGTCGCCGCACTCGATCAGTACGCAAGAGCTGAACTGGCG 19635 Query 236613 TGTCGGGGTACGAACGCCTGCCATAATCGGTGTCGGTAATGAAAGTTTGTGAGTCGAAAC 236672 |||||||| || ||||| | |||||| || || || | |||| ||| || ||||| Sbjct 19636 AGTCGGGGTGCGCACGCCGGACATAATTGGCGTAGGCAGAGAAATCTTGAAGGTTGAAAC 19695 Query 236673 TGCATTGTAGAA 236684 |||| ||||| Sbjct 19696 CGCATCATAGAA 19707 >seq38357 Length=36386 Score = 104 bits (114), Expect = 4e-17 Identities = 234/352 (66%), Gaps = 0/352 (0%) Strand=Plus/Minus Query 125969 GCGACAGCCCATTGGAGACTTAAACCCACCAGTCGTTTCAACTAGTTTGTCATAGTTCAA 126028 ||| |||||||| || | |||||| ||| || | ||| | | || || || | Sbjct 27932 GCGGCAGCCCATCGGGGTTTTAAACGAACCGGTGACCTTAACCACCTGATCGTAATTAAG 27873 Query 126029 AATGTCTGGGTACATACGCTTACTTGCACATTCAAGAGCTAACTTTTTGATGCCGTAGCA 126088 ||| || || ||||||||||| || |||||||| || || | || ||||||| | || Sbjct 27872 AATATCGGGATACATACGCTTGCTGGCACATTCGAGGGCGAGCTGTTTGATGTCATAATT 27813 Query 126089 CGGGTCGCCTTCTTTCAGATTCACGCCGTCTCTCAATGTGAAAACAAGCTTAGGGAAAAT 126148 | |||| | | || |||| | |||||| | | | |||||| || || || || | Sbjct 27812 GGCGTCGGCCGCCTTATGATTTATGCCGTCGCGAATGGCGAAAACCAGTTTGGGAAACAC 27753 Query 126149 AGCAGTTTTCTTAGTCTTACCTAGACCTGCAATACGATTCTGAAGAATACTTTTTTGAAT 126208 || ||||| | | || |||| || || ||||| || | ||||| ||||||||| Sbjct 27752 GGCCGTTTTACGATTTTTTCCTAATCCGGCGATACGGTTGCGCAGAATCGATTTTTGAAT 27693 Query 126209 AAGTTTTTCTTCCCACGACGTACCTAACCCGAAGTTGATTGTCGTGAATGGTGTCTGACC 126268 || ||| ||| | ||||| | || ||| | ||| || || ||||| || Sbjct 27692 CAGCCGCGCTTGCCAACAGGTACCCAGACCAAAGCCAAAGGTCACAAACGGCGTCTGGCC 27633 Query 126269 GTTTGAAGTCTGCATCGTATTGACTTGATATTCAAACGTCTGGAATGCATCG 126320 ||| | || || | |||||| || | |||||| | || ||| || || ||| Sbjct 27632 GTTGGCGGTGTGAAGCGTATTAACCTCATATTCCAGCGACTGAAAGGCGTCG 27581 Score = 86.0 bits (94), Expect = 1e-11 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 126546 TCGATTTCAGCATTACCCATTTTGAAGCCGCCTTCAAACATGCCTTTGATATCAATAAGC 126605 |||||||| || || |||||||| || || | ||||||||||||| || || ||| Sbjct 27326 TCGATTTCCGCGTTGCCCATTTTAAAACCTTTATTCAACATGCCTTTGAGGTCGATGAGC 27267 Query 126606 ATACAGTTGAATTGCGGGAATAATGGACTGTAGTCAAGGTCATGAAAATGAATATCGCCG 126665 || |||||||| |||||| || || |||||| || || ||| ||||||| |||||| Sbjct 27266 ATGCAGTTGAACATCGGGAAAAACGGTGAGTAGTCGAGATCGTGATAATGAATTTCGCCG 27207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 792373996711680