Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_028901.1 Length=43900 Score E Sequences producing significant alignments: (Bits) Value seq139038 228 2e-55 >seq139038 Length=11747 Score = 228 bits (252), Expect = 2e-55 Identities = 504/747 (67%), Gaps = 28/747 (4%) Strand=Plus/Plus Query 41220 GACACCATGATTATGGCCTTTCGCCACGCGCTGCCCGGTAGCCTCGATATGCAGTGCCAG 41279 ||||| ||| | ||||| || ||||| |||| ||| ||||| | | ||| | Sbjct 7014 GACACAATGGTCGAGGCCTACCGATACGCGTTGCCGGGTTCGCTCGAGAAACTCTGCGAA 7073 Query 41280 GTGCTGGGCGTTGACGCAGAGCACGCGAAAGATAAGGCAGGCAAGGCGCTGATTAAACGA 41339 ||||| |||| || |||| ||| ||||||||||| || |||||| |||| | || Sbjct 7074 GTGCTAAACGTTCCCGTGGAGCTCGCCAAAGATAAGGCGGGTAAGGCGTTGATCCAGCGC 7133 Query 41340 TTCTGTAAGCCCACCCCTAAGACCTACAAAATCCGCCGCTACACACGCGAGACGCACCCC 41399 |||||||| ||||| ||||||| ||||| || || ||||||||| ||||||||||| Sbjct 7134 TTCTGTAAACCCACGCCTAAGAATTACAAGATACGGCGCTACACAAAGCAGACGCACCCC 7193 Query 41400 GAAGAATGGGCCAAATTCTTGCG---CTATGCCGCGCTGGATATTGTTGCCATGCGTGAA 41456 ||||||||| ||| ||| ||| || || ||||| | | |||||||| Sbjct 7194 GAAGAATGG---AAACGCTTTGTAGACTACGCACGGCGCGATATCACTTCTATGCGTGAG 7250 Query 41457 GTCTACTGGCGCATACCGGACTGGGGCAACTCACCGAAG---GAAGATGAAATCCTGCTC 41513 | || || || | || ||| ||||| || || ||| | ||| | | Sbjct 7251 GCCTTCTACCGACTGCCAACATGG---AACTCCACGGAGATTGAAAACCGGATCTTAGTG 7307 Query 41514 ATCGACCAGTTGATTAACGACCGCGGCTTCTACGTTGACGTTGACCTGGCGAACGCCGCG 41573 | |||||| | ||||| ||||| || || ||||| || || || || |||| Sbjct 7308 CTTGACCAGATCATTAATGACCGAGGGTTTTACGTCGATACCGAGCTTGCTCGTTGCGCG 7367 Query 41574 ATCAAAGCGGTACAGGCGCATAAGGAAGAATTGAAGGAAGAAGCCTGGGAGCGATTTGGC 41633 | | || |||||| ||||||| ||||| | || | || || || || ||| Sbjct 7368 GTACAGGCCATACAGGAGCATAAGAAAGAACTTAAAGCCGAGGCTATGGCCAAATACGGC 7427 Query 41634 GGTAAG--CTGACAGGCAATGACTTCCTGCCAATCCTGCGTGATATCGCCCCGGCGTTCA 41691 | || || || || || |||||||| |||| | | | ||||||||| || Sbjct 7428 --TCAGGTCTTACCGGTGCGGATTTCCTGCCGGCATTGCGCGGTCTAGCCCCGGCGCACA 7485 Query 41692 CGATCCACAACGCGCAAAAATC---CACGCTTAACGACCTTCTTGAAGACCCGGACTTCC 41748 | | | || || || || | | ||| ||||| || ||||| || || ||| Sbjct 7486 CCGTACCGAATGCCCAGAAGGCGGTCTTGCTG---GACCTGCTAGAAGATCCAGATCTCC 7542 Query 41749 CCGACGAAGGCAAAGCGCTTATC---GAAATGCGCCTCGGCGCGTCATCAACGGCATCGA 41805 | ||||||| | ||| ||||| ||||||||||||||||| | ||||||||||||| Sbjct 7543 CAGACGAAGCCC--GCG-TTATCATTGAAATGCGCCTCGGCGCAGCGTCAACGGCATCGA 7599 Query 41806 CTAAATACAATCCGCTCGTTAATGGCCTGTCTGCCGATGGTCGCCGTCGTGGGTGTCTTC 41865 | |||||||| || || | | || ||||| ||||| || || || || || ||||||| Sbjct 7600 CAAAATACAAGCCACTTATCGAGGGTCTGTCCGCCGACGGCCGGCGCCGGGGTTGTCTTC 7659 Query 41866 AGTACGGCGGCGCAAAGCGCACGCTACGCTGGGCCGGTAAAGGCTTCCAGCCGCAAAACC 41925 | || || ||||| ||||| || ||| | ||||| || |||||| || ||||| || | Sbjct 7660 AATATGGTGGCGCCAAGCGAACCCTAAGATGGGCTGGGCGAGGCTTTCAACCGCAGAATC 7719 Query 41926 TGGCACGCGGCGAGTACAGCGACGACC 41952 | ||||| || | ||| |||||||| Sbjct 7720 TTGCACGTGGGTATTACCACGACGACC 7746 Score = 221 bits (244), Expect = 3e-53 Identities = 508/754 (67%), Gaps = 22/754 (3%) Strand=Plus/Plus Query 34512 ACCTTGCACTTGAGCAGGACGAAGCCGCGCGGCGCTTGCTTGATGCCGTTACGCGCCTTT 34571 || || || || |||| | |||||| | |||| |||||| | ||||||||| | ||| Sbjct 531 ACTTTACATTTTCGCAGCAGGAAGCCCCTTGGCGATTGCTTCACGCCGTTACGGGATTTT 590 Query 34572 TCGTGATACAGGTTCAATTGGCCCGGCTGATTGTCG-TCCGGTTGCTCGAGGAAGAACGC 34630 |||||||| || || | || ||| ||||| | | || || ||||||| || || || Sbjct 591 TCGTGATAAAGATTGATTTTACCCAT-TGATTCTGGATCAGGCTGCTCGATAAAAAAGGC 649 Query 34631 AGAATCGACAGCGCCATGCAGCGCGCCGGACCCACGGGGAGATC-TGCTGCCGTTTGCAC 34689 ||||| || || ||||||||||||||||| || || | ||| | || | || | | Sbjct 650 CGAATCCACTGCACCATGCAGCGCGCCGGAACCGCGCGCAGAGCGTGACG-CGCCACCCC 708 Query 34690 CCTTCGCCGGGTGGTGGATGACGCCCGCACTGCCGCCTGTATTTTCCGCAATGGCCTTCA 34749 | || |||||||| || | |||||| || ||||| || | || | |||| Sbjct 709 CTTTTGCCGGGTGATGAACGACGCCAGCCGATCCGCCGGTTGCGATAGAGATCTCTTTCA 768 Query 34750 GCGCTTTGACCACTTCACCCATATCGCTGGCGTTGTTCTCGTCGAACGGTTTAGCATCGG 34809 | || |||||||| |||||||| ||| | ||||| |||||||| | |||| Sbjct 769 GGGCGCGTACCACTTCCCCCATATCTGCCGCGCTATTCTCATCGAACGGCCGAAGGTCGG 828 Query 34810 CGGACCGCAGCGCAACAGTCTGGTTGAGTGAGTCGAACGCCACCAGGCCAACCGGCTCGC 34869 || || | || | ||||||||| || |||||||| || | || |||||| || || Sbjct 829 AAGAGCGTAAAGCCATAGTCTGGTTTAGAGAGTCGAAGGCTATCATGCCAACAGGATCTT 888 Query 34870 C----GTTAGCGGTGCGGTTGATGAAGCTGATAACTTCACGCAAGCCGGATTTGCTGGTG 34925 | | || | ||||| |||| || | | || ||| ||||| || | | | Sbjct 889 CACGGGCTATC-GTGCG---GATGTAGTCGGTCACCCGGCGCTTGCCGGTCTTTGTTGAG 944 Query 34926 ATATCCCAGCCGCGTGATTGCAGATCGATAATGTGCAGCTTGTCCAGGTCGTGCTCATAT 34985 || |||||||| | || |||| ||||||||| | ||||| | | ||| Sbjct 945 ATGTCCCAGCCCAATACCGAGAGGTCGACTATGTGCAGCCAATTGAGGTCATCTTGATAC 1004 Query 34986 TTAATCTGCA----ATGCTTCCTTACGCTGGTTGGAGGCTTCGCCACCTTCCGCGTCGAA 35041 || ||||| | || ||||||| || || ||||||||||| || |||| Sbjct 1005 TTTATCTGGAGCGCCTGTTTCCTTA----AGTGAGAACTCTCGCCACCTTCGGCATCGAG 1060 Query 35042 ATAGAAGCAATGAGACTGGACGACCTTC-GCGCCGCCGAACGGAATCCCCGCGGCAACCG 35100 ||||||||||||||| | || |||||| || ||| | || || || || ||||| || | Sbjct 1061 ATAGAAGCAATGAGATTTGATAACCTTCTGCCCCG-CAAAAGGTATGCCAGCGGCGACAG 1119 Query 35101 CACCCATTTGCCCCAGCACATAGAACGACTTACCGATGTTCGACTCACCGGCAAGATACC 35160 | |||| ||| || || ||||||| || || ||||| || || || || |||| Sbjct 1120 CGGCCATAGCCCCAAGGACGAAGAACGATTTGCCTATGTTTGATTCGCCCGCCGCGTACC 1179 Query 35161 AGGTCGATTTAAAGTTAATCAACCCCTCGATGATCGGGTCGTGCTTGCTGAACAGTGCAA 35220 | |||||| ||||| | ||||| || |||||||| ||| ||| |||||| ||| Sbjct 1180 ACGTCGATCGGAAGTTTAAAAACCCATCAATGATCGGCACGTTCTTAGTGAACAAGGCAG 1239 Query 35221 CCGGCTCGTTGTCCAAGTCTGCGTCCGTACATCC 35254 ||| || || ||| || ||||| || || || Sbjct 1240 ACGGTTCATTCATCAAATCGGCGTCGGTGCAGCC 1273 Score = 219 bits (242), Expect = 1e-52 Identities = 711/1079 (66%), Gaps = 40/1079 (4%) Strand=Plus/Plus Query 73 TAACGTGGTTTGTGTTAACTACGATGTGGTTGAGTGGCTGGTCGACTATTACGGCGATGC 132 ||||||||| ||| |||||||||| | | || ||| |||| | || || || | Sbjct 9779 TAACGTGGTGTGTTGTAACTACGATATCGCAGAATGGTTGGTGCAATACCTTGGTGACGA 9838 Query 133 GTGGCCCTTTACGGTCGTTGTTGCCGATGAATCGACTAAGCTGAAAGGCTATCGTAGCAA 192 ||||||||||| || || |||||||| |||||||| ||||| || | | || | | Sbjct 9839 TTGGCCCTTTACCGTTGTCGTTGCCGACGAATCGACAAAGCTTAA-GTCGTTCCGAACGC 9897 Query 193 GCAGGGGAGC-AAGCGCGCCCGCGCACT-GGCAGCGATTGCACATAAACA------CGTC 244 | | || | || |||||||| || || |||| || || ||||| | |||| Sbjct 9898 GTGGCGGGTCTAAACGCGCCCGTGCTCTTGGCAAA-ATCGCCCATAAGAAAAAAGGCGTC 9956 Query 245 AAGCGCTGG-ATT-----AACCTGACCGGCACACCAGCGCCAAACGGGCTAAAAGACCTG 298 || | || ||| ||| | || || || || || |||||||||| || || || Sbjct 9957 AAAGTCCGGTATTGGTGGAACTTAACGGGTACGCCCGCTACAAACGGGCTCAAGGATCTT 10016 Query 299 TGGGGGCAGACGTGGTTTGTCGACGGTGGCGAACGACTCGGCAGTAGTTATAAGGCATTC 358 ||||| |||| |||||| | || | ||||| || || |||| || | || ||| Sbjct 10017 TGGGGTCAGAACTGGTTTATAGATGCTGGCGCGCGTCTGGGCACATCTTTCACCGCGTTC 10076 Query 359 ACCGATCGCTGGTTCATTAGCAAGCCTGTTAAGCCTGGAAGCTTCACGATGCAGCACGCC 418 | || || | |||| |||| ||||| | ||| | | || | | || Sbjct 10077 AAAGACCGGTATTTCACCTCGAAGCAAA--AAGCC-GACAGCA--AATACGCCGTAGACC 10131 Query 419 CCGCTAAAGAACTCCGAGAA-AGAA------ATACAACAACGCCTGTCTGACGTATCACT 471 | | | |||||| |||| ||||| | || | ||| | || || Sbjct 10132 TCAT--ACCCATGCCGAGATCAGAACAGCGCATACATCGTGCATTGGCCGACATCTCGCT 10189 Query 472 AACCGTTGACGCGGCTGAATACTTCGGATGCGACAAGCCAATCTATACG-CCGGTTGTTG 530 || || |||||| || |||||||||| || || || | || | || ||| | | Sbjct 10190 GACGGTAGACGCGTCTAAATACTTCGGTTGTGAAGAGGCGAT-TGTAGTTCCGCGTCCGG 10248 Query 531 TGGACCTGCCGAAGAAAGCCCGCAAGATCTACGACCAGTTTGA-AAGCGAGCTATTTGCC 589 | ||||||| ||||| | || |||| ||| | | | |||| ||| ||| Sbjct 10249 TCTACCTGCCCCGTAAAGCGCAAAAAGTCTATGACGATATGGTGAAGCT-GCTGAAGGCC 10307 Query 590 GAACTGGAA-AGCGGAACAGTGGAAGCGGCGAACGCGGCATCGAAGACAATTAAGTGCCT 648 || || || || |||| ||| || || | || ||||| | ||||| ||| ||| | Sbjct 10308 GATCTCGATGAGGGGAA-AGTCGACGCCGTTAATGCGGCGGCCAAGACGGCTAAATGCTT 10366 Query 649 TCAGCTTGCATCCGGGGCCGTGTATAAGGTGGATGAAGACGGCGAACGGACCGACAAGTG 708 ||| | || ||||| ||||| ||| | || | ||||| || | ||| | | || Sbjct 10367 GCAGATAGCTTCCGGTGCCGTTTATGTGACCGACGCCGACGGTGAGCCGACAGGTGACTG 10426 Query 709 GGTGAAGATTCACGACGCGAAGCTGGACGCGCTGGAAAGTATCGTGGAGGAGTTGAACGG 768 || | ||||| ||| ||||||||||||||| || ||| || ||| | ||||| Sbjct 10427 GGAGCTTATTCATAACGAGAAGCTGGACGCGCTCGAGTCTATTTATGAAGAGCTCAACGG 10486 Query 769 TGCGCCGTTGCTCGTTGCGTATCAGTACAAGCATGACCTGGCACGTCTTAAGAAGAAATT 828 |||||| || | || || ||| | || ||||||| || ||| | ||||||||| Sbjct 10487 TGCGCCACTGTTAGTGGCCTATTACTATCGCCATGACCGGGAACGCATCCTGAAGAAATT 10546 Query 829 TCCGCACGGCGTTGCGCTGGGTAAAGGTAAGCAGGGCAATAAGGA-TATGGAAGCGTGGA 887 || | | ||| || ||||| |||||||| | |||| | | ||| || ||||| Sbjct 10547 CCCCGAGGCCGTGGCACTGGGCAAAGGTAAA-ACCGCAACCCGCAATATCGAGCTGTGGA 10605 Query 888 ACAGAGGCGAGATCCCCATCATGTTTGCGCACCCGGC-ATCGGCGGGCCACGGCCTTAAC 946 || ||| ||||||| || | || || |||||||| | || ||||| ||||||||||| Sbjct 10606 ACCAAGGGAAGATCCCTATGCTATTGGCTCACCCGGCCAGCGCCGGGC-ACGGCCTTAAC 10664 Query 947 TTGCAGGACGGCGGTCATCACCTGGCAATCTTCTCCGATACCTGGAACTTTGAGCACTTT 1006 ||||| |||||||| || || ||||| | || ||||| |||||||| || ||| | Sbjct 10665 TTGCAAGACGGCGGACACCATCTGGCCGTTTTTAGTGATACGTGGAACTTGGAATACTAT 10724 Query 1007 TCGCAGATCGTTGAACGTATCGGGCCGGTTCGCCAGATGCAAGCAGGACACCCCCGTCCG 1066 ||||||||||| ||||| || ||||| || || || || || || || || || || Sbjct 10725 TCGCAGATCGTCGAACGAATAGGGCCAGTGCGACAACATCAGGCGGGCCATCCACGGCCA 10784 Query 1067 GTATTCGTCTACATTATCCAGGCGCGCGGAACACTGGACGAACTGGTCGCCGAGCGTCG 1125 || || || | | | || ||||| ||| || || |||||| | ||||| ||||| || Sbjct 10785 GTTTTTGTGTTCTTGATACAGGCTGCCGGTACGCTCGACGAAGTCGTCGCGGAGCGCCG 10843 Score = 87.8 bits (96), Expect = 5e-13 Identities = 212/316 (67%), Gaps = 4/316 (1%) Strand=Plus/Plus Query 40101 AAGTGGATGGACCGCCACTACGCCCAGGATTCTAAGGAATGCGCAGTGCGCGACGGCGAC 40160 || ||| | |||||||| |||| ||||| ||||| || ||| ||||||||||| ||| Sbjct 5307 AAATGGTTTGACCGCCATTACGGACAGGACTCTAAAGAGTGCTGTGTGCGCGACGGTGAC 5366 Query 40161 GAGCGCGATGAAGTAACCGAAGAATTCGAAGGCATGTTGTATATCAACGCCAAATCGTTC 40220 ||||||| ||| || ||||| |||| | ||| ||||| || || ||| Sbjct 5367 CAGCGCGAAGAACCAAGTCCTGAATTTGAAGACGCTTTGATCATCAATGCTAAGCGCTTC 5426 Query 40221 AAACAACCAATCATTCAAACGTCACTCGGCGAGAAGCAGACTGAACAAGGTCTGACCATC 40280 || || || | || ||| ||| ||||| ||||||| ||| || ||||| ||| Sbjct 5427 AAGCAGCCGAGGATCTTAACTTCAACGGGCGAAGAGCAGACCGAATCTGGCCTGACTATC 5486 Query 40281 GACGGCGACGAGATTGAAGGCCAGGAGATCTACTCCGGTTGTTATTGC-AACGTGTCCCT 40339 ||| || ||||| ||||| | || | || ||| || || || ||||| || | Sbjct 5487 GACAATGATGAGATCGAAGGTGACGAAGTTTATAGCGGCTG-CATGGCGAACGTCTCTGT 5545 Query 40340 TGATATTTGGGCGTGGAACAACACCAACGGCAAGGGACTCGG-TGCTGGCTTGCTGGGTT 40398 | ||||| ||| | ||| |||||||| || || || ||| ||| || || Sbjct 5546 AAGCTTCTGGGCATGGGATAACGAGAACGGCAAAGGCCTTGGCTGCGAACTT-CTCGGCG 5604 Query 40399 TACGCTTCCGTGATGA 40414 | || |||||||| || Sbjct 5605 TCCGTTTCCGTGAAGA 5620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140126644245224