Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_029013.1 Length=177688 Score E Sequences producing significant alignments: (Bits) Value seq2788 269 3e-67 seq14905 125 8e-24 seq38357 102 9e-17 seq2551 91.5 2e-13 >seq2788 Length=136445 Score = 269 bits (298), Expect = 3e-67 Identities = 374/518 (72%), Gaps = 18/518 (3%) Strand=Plus/Plus Query 77070 TCGAACTCAGTCTGATCAGCTTGATAGAAAGCATCATACAGGCGATCATTTGCAACGTCA 77129 |||||||| |||||| || || |||| || || ||||||| | ||| ||||| Sbjct 19166 TCGAACTCGTCCTGATCGGC--GA-AGAACGCGTCGTACAGGCCAG-----GCA-CGTCA 19216 Query 77130 G---GGCTGAACAGTGTGATGTAATCGTTATTGATTAAACGCTTATACATCAAATCGTTA 77186 | |||||||||| ||||||| || || | | ||||| |||||||| | ||| Sbjct 19217 GACGGGCTGAACAGAGTGATGTCGCCGCCTTTAACCAGACGCTGATACATCAGTTTGTTG 19276 Query 77187 AGCTGAACGCCATAATCCAGGTGACGAATACGGTTATTCTCAACACCTTTGTTGTTTTTC 77246 | ||| ||||| || |||| |||||||| ||||| |||||||| |||||||||| Sbjct 19277 ATCTGCACGCCGTAGTCCATGTGACGAACGCGGTTGCCTTCAACACCACGGTTGTTTTTC 19336 Query 77247 AGAACCAGCAGGTTTTCAACTTCCAAATGCCAGATCGGATAATACAACGTTGCAGCACCA 77306 |||||||||||| |||||||||||| ||||| ||||| || ||| || |||||||| Sbjct 19337 AGAACCAGCAGGCTTTCAACTTCCAGGTGCCACATCGGGTAGAACAGGGTCGCAGCACCG 19396 Query 77307 CCACGAACGCCACCTTGTGAACAGGATTTAACCGCTGTCTGAATATGTTTCCAGAACGGG 77366 || || ||||| || || || |||||||||||||| ||||| | || || |||||||| Sbjct 19397 CCGCGCACGCCGCCCTGAGAGCAGGATTTAACCGCCGTCTGGAAGTGCTTATAGAACGGG 19456 Query 77367 ATCACGCCTGTATGTACTGCTTCACCACCACGGATTTTAGAACCCATTGCGCGAATGTGT 77426 || ||| ||||| | ||||||||| || || || ||||| || || ||| | Sbjct 19457 ATACAGCCGGTATGGAATGCTTCACCGCCGCGAATCGGGCTACCCAGCGCACGGATGCGG 19516 Query 77427 CCAGCATTAACACCGATACCCGCGCGTTGTGAAATATACTTCACGATCGC---AGAGGTT 77483 ||||| || | |||||||| ||||| ||||||| || |||||||| || ||||| Sbjct 19517 CCAGCGTTGATGCCGATACCTGCGCGCTGTGAAACGTATTTCACGATGGCGCTGGAGGT- 19575 Query 77484 ACAGCATTCAGAGAACCCAGTGAATCACCTGATTCAATCACTACGCAACTGGAAAACTGA 77543 || || | || |||| || || | || |||| ||||||| | ||||| Sbjct 19576 --CGCGTTGATGGAGTCCAGGCTGTCGCCGCACTCGATCAGTACGCAAGAGCTGAACTGG 19633 Query 77544 CGCGTAGGAGTACGCACACCCGCCATAATAGGCGTAGG 77581 || || || || ||||| || | |||||| |||||||| Sbjct 19634 CGAGTCGGGGTGCGCACGCCGGACATAATTGGCGTAGG 19671 Score = 98.7 bits (108), Expect = 1e-15 Identities = 322/489 (66%), Gaps = 20/489 (4%) Strand=Plus/Plus Query 74796 CCAACTAGGTAAGAACTCACTTCAACCTCTTGCGGGGCTACCTGAACGTTGTCAGACTTC 74855 || || || ||||| ||||||||||| || ||||| || ||||| |||||||||||| | Sbjct 16811 CCCACCAGATAAGAGCTCACTTCAACTTCCTGCGGCGCAACCTGTACGTTGTCAGACACC 16870 Query 74856 AACCATTTGTTCATCCACGGGTACGGGTTAGGACTCGGTTTAAACGGAGACTGT-AACCC 74914 | ||| ||| ||||| ||| |||||| | | | || ||||| | | || | || Sbjct 16871 AGCCACGCGTTGATCCATGGGATCGGGTTTGAGCGAGTCTTGAACGGTG-CAGTCAGACC 16929 Query 74915 AACCGCTCGCATACGTTGGTCGGTTAAGTGTTCGATGTA--GGC---GATTGTACTTTTC 74969 || || ||||||| || ||| | || ||||||||| ||| || ||| |||| Sbjct 16930 CACGGCCTGCATACGGATGTTGGTGATGTATTCGATGTACTGGCAAAGAATGT-CTTT-- 16986 Query 74970 AGTGTCACGCCGTCAACATC--ACCGATGCTGAATAAGTGTTCAGCCCATTCTTTTTCCT 75027 || ||| |||| | |||| ||| || ||| | | ||| ||||| ||||| || | Sbjct 16987 -GT-TCAGGCCG--ATCATCGAGCCGTCGCGGAAAAGATATTCTGCCCAGTCTTTCTCTT 17042 Query 75028 GCTCGTAAACTTCGAGGAAAATCTTTGTTGCTTCTTCTTCGTACTGATACGCGATTTCTG 75087 |||| | | ||| | | |||| ||| ||| | ||||| | Sbjct 17043 GCTCTGCGGCCAGCACGAACAGGTCATAACACTCTTTCTCGCACTCTTTGGCGATGATGG 17102 Query 75088 CCATTTCTGGGTCATCTTTACCCATCTGC--CAGAGTCGGATCTTGCTTTGAGTACCTTT 75145 ||||||| |||||||| ||| || ||| || | | ||| ||||| || | Sbjct 17103 CCATTTCCGGGTCATCGGCACCGGAGCGCAGCAGGTTCAGCGCGTGC--TGAGTCCCGGT 17160 Query 75146 CTGATGAAGTGCTTCATCACGGGCAATCAGACGCATGATCTTCGCGTTACCTTCCATCTT 75205 | | || || ||||| || ||||| || || ||||| || || |||||||||||| Sbjct 17161 CAGGTGGAGCGCTTCGTCGCGGGCGATAAGCTTGATGATTTTTGCATTACCTTCCATCAG 17220 Query 75206 GCCCTGTTCGGCAAAGTTGAAAGTAAAGGTAAACGAGACATAGAAACGGATCGCTTCCAG 75265 | |||| || ||| || | | ||| || ||| |||||||| | |||||||| Sbjct 17221 CTCGCGTTCTGCGAAGGCAAATGAACAGGCGAAGCTGACGTAGAAACGCACGGCTTCCAG 17280 Query 75266 AGCGTTGAC 75274 || ||||| Sbjct 17281 CGCATTGAC 17289 Score = 86.0 bits (94), Expect = 7e-12 Identities = 135/189 (71%), Gaps = 6/189 (3%) Strand=Plus/Plus Query 75617 CGGGAGAAACGCCAGGTTAGGGCCGCGTCCCTGAATGGTATCTAACAGGGTTTGATATTG 75676 ||| || | ||||| |||||||| || |||||||| | || | ||| || ||||| | Sbjct 17596 CGGCAGTAGCGCCACGTTAGGGCTACGGCCCTGAATCGAGTCCAGCAGCGTCTGATACTT 17655 Query 75677 CAGGTTAGAATCA--AAAATGATTTTTTCGTGTTCCGGCATTTT-TGCATACTGCATACG 75733 |||||| ||| |||||| |||||| || ||||||| || | | | ||||| Sbjct 17656 CAGGTTGC--TCAGGAAAATGTGTTTTTCATGCTCCGGCAGACCCTGGA-AGTCGATACG 17712 Query 75734 GTCTATCGACAGATCCACTTCTTCCGGTCGCCAGAAGAATGACAGTTGTTTTTCAGTCAA 75793 ||| | | || ||||||||||| ||||||||||| ||||| || ||||| ||| Sbjct 17713 GTCACGGGCAACGTCAACTTCTTCCGGACGCCAGAAGAAGGACAGCTGCTTTTCGATCAG 17772 Query 75794 AGTTTCGAA 75802 ||||||| Sbjct 17773 TTTTTCGAA 17781 >seq14905 Length=119551 Score = 125 bits (138), Expect = 8e-24 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 67743 TTACATGCTTTCCGTAAAGGTTCTGGCGATAACGTCGCGCTGTTGTTCTGGAGTCAGTGC 67802 ||||| ||| | || || || | | ||| ||||| |||| ||||| || |||| | Sbjct 42459 TTACAGGCTCTGAGTGAAAGTACGAGTGATCACGTCCTGCTGCTGTTCCGGCGTCAACGA 42400 Query 67803 ATTAAAGCGAACTGCGTAACCTGAAACGCGGATCGTTAACTGTGGGTACTTCTCAGGATG 67862 ||||| || || ||||| || || || ||||| || ||||| || |||||||||||||| Sbjct 42399 GTTAAAACGCACGGCGTACCCCGAGACACGGATAGTCAACTGAGGATACTTCTCAGGATG 42340 Query 67863 TTTCACAGCATCTTCCAGGGTTTCGCGACGTAGCACATTCACGTTTAGGTGCTGTCCACC 67922 ||| | |||||||| || || || ||||| | || || ||||| || ||||| || || Sbjct 42339 TTTTATCGCATCTTCGAGCGTCTCACGACGCATGACGTTAACGTTAAGATGCTGCCCCCC 42280 Query 67923 TTCAACTTTAACAGTCGGTTGAAACTC 67949 ||| || ||| || || |||| ||| Sbjct 42279 TTCTACGCGAACCGTTGGCTGAATCTC 42253 >seq38357 Length=36386 Score = 102 bits (112), Expect = 9e-17 Identities = 210/307 (68%), Gaps = 4/307 (1%) Strand=Plus/Minus Query 142069 GCAATCTGTGCGGTGATCTGTGCCATAAGAGCAGTCGCAACACCGATTGATTTCGGGGGT 142128 |||| ||| ||| | ||||||||| | | || ||||| ||| || ||||| | Sbjct 27386 GCAACCTGAGCGATAATCTGTGCCGTGACGGCGGTCGCGGTGGAGATGGACTTCGGCGTA 27327 Query 142129 TCGATGTCTGCGTTACCCATCTTGAAGCCATTAGCCAGCATACCTTTCAAATCCACCAGA 142188 ||||| || ||||| ||||| || || || ||| || ||| ||||| | || | || Sbjct 27326 TCGATTTCCGCGTTGCCCATTTTAAAACCTTTATTCAACATGCCTTTGAGGTCGATGAGC 27267 Query 142189 CAGCAGTTTGTGTATGGCGTGAA-CGGGCTGTAATCCAGATCATGATAGTGGATGTCGCC 142247 |||||| | || | | || ||| ||| || ||||| ||||| || || ||||| Sbjct 27266 ATGCAGTT-GAACATCGGGAAAAACGGTGAGTAGTCGAGATCGTGATAATGAATTTCGCC 27208 Query 142248 GGAGTCATGCGCTTCTACGATATGTTTCGGAAGGATATGATTACGGGCGAAATGCTTCGC 142307 | || || || || | | || || ||||| | ||| || | || ||||| Sbjct 27207 GCGCTCGTGGGCCAGCACCACGTCACGAGGCAGAATATGCTGACGCGCATAGTGTTTCGC 27148 Query 142308 TACAATACCCGCCAGCAAATCGCGCTGTGTCGGGAATACCCTTGC-GTCTTTGTTCGCGT 142366 |||||| |||||||||| ||||||||||| |||||| | |||| ||| || || |||| Sbjct 27147 TACAATCCCCGCCAGCAGGTCGCGCTGTGT-GGGAATGACTTTGCTGTCCTTATTGGCGT 27089 Query 142367 TCTCGTT 142373 | || || Sbjct 27088 TTTCATT 27082 >seq2551 Length=53185 Score = 91.5 bits (100), Expect = 2e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 67743 TTACATGCTTTCCGTAAAGGTTCTGGCGATAACGTCGCGCTGTTGTTCTGGAGTCAGTGC 67802 ||||| ||| |||||||| | || || ||||| |||| |||||| || |||| Sbjct 37116 TTACAGCGTTTTAGTAAAGGTACGGGTAATCACGTCCTGCTGCTGTTCTTTGGTTAGTGA 37057 Query 67803 ATTAAAGCGAACTGCGTAACCTGAAACGCGGATCGTTAACTGTGGGTACTTCTCAGGATG 67862 || ||||| || || || |||||||||||||| || | ||| ||| | |||||||||| Sbjct 37056 GTTGAAGCGTACCGCATAGCCTGAAACGCGGATAGTCAGCTGAGGGAATTTCTCAGGATT 36997 Query 67863 TTTCACAGCATCTTCCAGGGTTTCGCGACGTAGCACATTCACGTTTAGGTGCTGTCCACC 67922 || || || || ||| | ||||| | || || ||||| || ||||| || || Sbjct 36996 TTCCATGGCCTCCAGCAGCATCTCGCGGTTCATTACGTTAACGTTCAGATGCTGACCGCC 36937 Query 67923 TTC 67925 ||| Sbjct 36936 TTC 36934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567485550247680