Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_029042.1 Length=156833 Score E Sequences producing significant alignments: (Bits) Value seq2788 98.7 1e-15 seq6040 86.0 6e-12 >seq2788 Length=136445 Score = 98.7 bits (108), Expect = 1e-15 Identities = 287/434 (66%), Gaps = 11/434 (3%) Strand=Plus/Minus Query 102611 TCTTCCAACACCTATTATGTCCGGCGTCCGCACCCCGACCCGACAGTTCAGCTCTTGTGT 102670 ||| || || || |||||||||||||| ||||||||||| || |||||||||||||| || Sbjct 19675 TCTGCCTACGCCAATTATGTCCGGCGTGCGCACCCCGACTCGCCAGTTCAGCTCTTGCGT 19616 Query 102671 ATTGATC-AAACTGGTGACACATTGGACTCAATTAATGCCACTGCGAAAAGCATCGTGGA 102729 | ||||| | || |||| ||||||| || || || || | | ||||||| | Sbjct 19615 ACTGATCGAGTGCGGCGACAGCCTGGACTCCATCAACGCGACCTCCAGCGCCATCGTGAA 19556 Query 102730 TTATGTTTCCAAACGTGCTGGCATCGGATTCGATGTTGGGGCAATTCGTGGCATTGGTAG 102789 || ||||| | || || || ||||| || | | ||| || |||| | ||||| Sbjct 19555 ATACGTTTCACAGCGCGCAGGTATCGGCATCAACGCTGGCCGCATCCGTGCGCTGGGTAG 19496 Query 102790 CCCTATCCGTAAAGGGGAAATGGTCCATACAGGTCTG-GTTCCATTCATCAAGTATTT-- 102846 ||| || || || ||| ||||||| || ||| | || ||| ||| | || Sbjct 19495 CCCGATTCGCGGCGGTGAAGCATTCCATACCGG-CTGTATCCCGTTCTATAAGCACTTCC 19437 Query 102847 -GACTGGTGCCCTGAAGTCTTGCTCTCAAGGCGGTATCCGTGGTGGATCGGC-AACATGC 102904 ||| || | || || |||||||| ||||| | || || || | || | | || Sbjct 19436 AGAC---GGCGGTTAAATCCTGCTCTCAGGGCGGCGTGCGCGGCGGTGCTGCGACCCTGT 19380 Query 102905 TATGTTCCCATCTGGCATTATCAATTTGATGATGTCGTTGTTCTCAAAAACAACCGTGGA 102964 | | || || ||||| || |||| | | ||||| |||||||||||||| Sbjct 19379 TCT-ACCCGATGTGGCACCTGGAAGTTGAAAGCCTGCTGGTTCTGAAAAACAACCGTGGT 19321 Query 102965 TTGGAAGAGAACCGTGAACGCCGTATCGACTATGGGATTCAGATTAACCGCGTTATGTTC 103024 | |||| ||||| | || | || ||||| || | ||||| ||| | |||| Sbjct 19320 GTTGAAGGCAACCGCGTTCGTCACATGGACTACGGCGTGCAGATCAACAAACTGATGTAT 19261 Query 103025 GAGCGCCTGGTGAA 103038 |||| ||||| || Sbjct 19260 CAGCGTCTGGTTAA 19247 >seq6040 Length=129903 Score = 86.0 bits (94), Expect = 6e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 19443 TGGTGACCCTGGCTGGACTTGAACCAGCGACCAATCGATTATGAGTCGACTGCTCTAACC 19502 ||||| ||| ||||||||||||||| |||||| ||||||||||||| |||||||||| Sbjct 118352 TGGTGGCCCCTACTGGACTTGAACCAGTGACCAAGCGATTATGAGTCGCGTGCTCTAACC 118293 Query 19503 -ACTGAGCTACGGG 19515 ||||||||| ||| Sbjct 118292 AACTGAGCTAAGGG 118279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500865542420880