Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_029091.1 Length=168771 Score E Sequences producing significant alignments: (Bits) Value seq14905 147 2e-30 seq2788 140 3e-28 seq2551 84.2 2e-11 >seq14905 Length=119551 Score = 147 bits (162), Expect = 2e-30 Identities = 137/174 (79%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 123123 CAACATCTGAACGTTAACGTTCTGCGTCGTGAAACTCTAGAAGATGCAGTTAAGCATCCA 123182 || ||||| ||||||||||| |||||||||| || || |||||||| | || ||||| Sbjct 42286 CAGCATCTTAACGTTAACGTCATGCGTCGTGAGACGCTCGAAGATGCGATAAAACATCCT 42345 Query 123183 GAAAAATATCCGCAGCTGACCATCCGTGTATCTGGTTATGCAGTTCGCTTTAACTCTCTG 123242 || || ||||| ||| |||| |||||||| || || || || || || |||||||| || Sbjct 42346 GAGAAGTATCCTCAGTTGACTATCCGTGTCTCGGGGTACGCCGTGCGTTTTAACTCGTTG 42405 Query 123243 ACTCCGGAACAGCAGCGCGACGTTATCGCTCGCACCTTTACTGAGAGTCTATAA 123296 || ||||||||||||| ||||| ||| |||| || || ||| |||| || ||| Sbjct 42406 ACGCCGGAACAGCAGCAGGACGTGATCACTCGTACTTTCACTCAGAGCCTGTAA 42459 >seq2788 Length=136445 Score = 140 bits (154), Expect = 3e-28 Identities = 300/441 (68%), Gaps = 8/441 (2%) Strand=Plus/Minus Query 41873 CGTTTTTATGATGCCGTTTCTACTCATCAAG-TTTCATTGCCAACCCCAATTATGGCAGG 41931 ||||| |||||||| ||||| || | ||||| |||| |||| || ||||||||| | || Sbjct 19710 CGTTTCTATGATGCGGTTTCAAC-CTTCAAGATTTCTCTGCCTACGCCAATTATGTCCGG 19652 Query 41932 TGCTCGTACTCCGACTCGCCAGTTCTCTAGTTGTGTAGTTATTGAAGCCGGTGATTCGTT 41991 | || || ||||||||||||||| ||| ||| | || || ||| || | Sbjct 19651 CGTGCGCACCCCGACTCGCCAGTTCAGCTCTTGCGTACTGATCGAGTGCGGCGACAGCCT 19592 Query 41992 AAAATCTATTAACAAAACTTC-AGCATCAATTATTGAATATATTTCTAAACGAGCTGGTA 42050 | || || ||| || || ||| || | | |||| |||| | || || |||| Sbjct 19591 GGACTCCATCAACGCGACCTCCAGCGCCA-TCGTGAAATACGTTTCACAGCGCGCAGGTA 19533 Query 42051 TCGGTATCAACGTTGGTATGCTTCGTGCAGAAGGTTCTAAGATCGGTATGGGTGAAG--T 42108 |||| ||||||| ||| | ||||| ||| ||| | ||||||| | Sbjct 19532 TCGGCATCAACGCTGGCCGCATCCGTGCGCTGGGTAGCCCGATTCGCGGCGGTGAAGCAT 19473 Query 42109 TCGACATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAATCTTGTTC 42168 || ||||| || ||| || |||| || || ||||| || || || ||||| || || Sbjct 19472 TC--CATACCGGCTGTATCCCGTTCTATAAGCACTTCCAGACGGCGGTTAAATCCTGCTC 19415 Query 42169 TCAAGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCACTTAGAAGT 42228 ||| || || | || || |||||||| || || || |||||||||||| | ||||| Sbjct 19414 TCAGGGCGGCGTGCGCGGCGGTGCTGCGACCCTGTTCTACCCGATGTGGCACCTGGAAGT 19355 Query 42229 AGAGAACCTATTAGTTCTGAAAAATAACAAAGGCGTGGATGAAAACCGTATTCGACATAT 42288 || | ||| | ||||||||||| ||| || || || | ||||| |||| || || Sbjct 19354 TGAAAGCCTGCTGGTTCTGAAAAACAACCGTGGTGTTGAAGGCAACCGCGTTCGTCACAT 19295 Query 42289 GGACTACGGAATTCAGATTAA 42309 ||||||||| | ||||| || Sbjct 19294 GGACTACGGCGTGCAGATCAA 19274 >seq2551 Length=53185 Score = 84.2 bits (92), Expect = 2e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 123121 GTCAACATCTGAACGTTAACGTTCTGCGTCGTGAAACTCTAGAAGATGCAGTTAAGCATC 123180 |||| ||||||||||||||||| || || || | || || || | | ||| Sbjct 36941 GTCAGCATCTGAACGTTAACGTAATGAACCGCGAGATGCTGCTGGAGGCCATGGAAAATC 37000 Query 123181 CAGAAAAATATCCGCAGCTGACCATCCGTGTATCTGGTTATGCAGTTCGCTTTAACTCTC 123240 | || |||| || |||||||| ||||| || || || ||||| || ||||| ||||| | Sbjct 37001 CTGAGAAATTCCCTCAGCTGACTATCCGCGTTTCAGGCTATGCGGTACGCTTCAACTCAC 37060 Query 123241 TGACTCCGGAACAGCAGCGCGACGTTATCGCTCGCACCTTTACT 123284 | || |||||||||| ||||| || | || ||||||||| Sbjct 37061 TAACCAAAGAACAGCAGCAGGACGTGATTACCCGTACCTTTACT 37104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539000745174960