Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq88566 96.9 2e-15 seq123102 93.3 3e-14 >seq88566 Length=1870 Score = 96.9 bits (106), Expect = 2e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27788 AAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCA 27847 |||||||||| || || ||||| ||||| || ||| || ||| |||| || ||| Sbjct 458 AAATGCAAATATTCGTTAAAACCCTTACGGGTAAAACCATCACACTTGAGGTTGAACCTT 399 Query 27848 CCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 |||| | | || |||||| || || || || ||||| |||| || | Sbjct 398 CCGATACTATTGAACATGTCAAAGCCAAGATTCAAGATAAGGAAGGAATTCCACCAGATC 339 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| ||||||||||| || ||||| |||| |||| ||| | ||| ||||| | Sbjct 338 AGCAACGTTTAATTTTTGCTGGCAAACAGCTGGAAGACGGACGAACTTTGGGTGATTATA 279 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGT 28005 |||| ||||| || || |||||||| || |||||| Sbjct 278 ACATTCAAAAGGAATCTACGTTGCATTTAGTATTGCGT 241 >seq123102 Length=1410 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/234 (69%), Gaps = 14/234 (6%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| ||||| | ||||| ||| ||| ||| | || || ||| | Sbjct 816 ATGCAAATATTTGTTAAAACATTGACTGGCAAAACTATCACATTGGAAGTTGAACCTTCG 757 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 || ||| |||| || ||| |||||| || || ||||| |||| | Sbjct 756 GA-----TACCATCGAGAACGTTAAAGCAAAAATTCAAGATAAGGAAGGCATTCCCCCAG 702 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||||| |||||||| ||||| || || | || || | ||||| || ||||||| Sbjct 701 ACCAACAACGTTTAATTTTCGCCGGCAAGCAGCTTGAGGATGGACGCACATTATCCGATT 642 Query 27965 ACAACATCCAAAAAGA--GAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| ||||| || | ||||| || |||||| ||||| |||| || || Sbjct 641 ACAACATTCAAAAGGAATCAACACTT--CACTTGGTTCTGCGTCTGCGGGGTGG 590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355259347347642