Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq88566 165 5e-36 seq123102 125 5e-24 seq119770 120 2e-22 seq21876 113 3e-20 seq138766 104 2e-17 >seq88566 Length=1870 Score = 165 bits (182), Expect = 5e-36 Identities = 167/215 (78%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 23609 AAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCA 23668 ||||||| || |||||||||||||| ||||| ||||| ||||| || || ||||| | Sbjct 458 AAATGCAAATATTCGTTAAAACCCTTACGGGTAAAACCATCACACTTGAGGTTGAACCTT 399 Query 23669 CGGACACTGTTGAA-ATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || ||| ||||| || | ||| | || ||| || || ||||| | || |||||| Sbjct 398 CCGATACTATTGAACATGTCAAAGC-CAAGATTCAAGATAAGGAAGGAATTCCACCAGAT 340 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || |||||||| ||||| |||||||| |||||||||| ||| ||||| || ||||| Sbjct 339 CAGCAACGTTTAATTTTTGCTGGCAAACAGCTGGAAGACGGACGAACTTTGGGTGATTAT 280 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 ||||| ||||| || || || || |||||||| || Sbjct 279 AACATTCAAAAGGAATCTACGTTGCATTTAGTATT 245 >seq123102 Length=1410 Score = 125 bits (138), Expect = 5e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || |||||||| | || || ||||| ||||| | |||||||| | || Sbjct 816 ATGCAAATATTTGTTAAAACATTGACTGGCAAAACTATCACATTGGAAGTTGAACCTTCG 757 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || || ||||| |||||| || || || ||||| | || ||||| || Sbjct 756 GATACCATCGAGAACGTTAAAGCAAAAA-TTCAAGATAAGGAAGGCATTCCCCCAGACCA 698 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| |||||||| || |||||||| || || || || | |||||| ||| ||||||||| Sbjct 697 ACAACGTTTAATTTTCGCCGGCAAGCAGCTTGAGGATGGACGCACATTATCCGATTACAA 638 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| ||||| || || ||| | || || ||| Sbjct 637 CATTCAAAAGGAATCAACACTTCACTTGGTT 607 Score = 118 bits (130), Expect = 7e-22 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 23635 ACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAA-TATTAAAACA 23693 ||||||||||| |||||| | || ||||| | | || || |||||| | ||||| | Sbjct 1020 ACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCTGATACCATTGAAAATGTTAAAGCT 961 Query 23694 AAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAA 23753 |||| || || |||||||| | || ||||||||||| ||||| || || || ||||| Sbjct 960 AAAA-TTCAAGATAAAGAAGGAATCCCACCAGATCAACAACGTTTGATTTTCGCTGGCAA 902 Query 23754 ACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACA 23813 ||| | || || | |||||| || |||||| || || || || || || ||||| || Sbjct 901 ACAGTTAGAGGATGGACGCACATTGTCCGATTATAATATTCAGAAGGAATCTACATTGCA 842 Query 23814 TTTAGTTTTAAGGTTGCGAGGAGG 23837 |||||| ||| | | || ||||| Sbjct 841 TTTAGTATTACGCCTTCGTGGAGG 818 >seq119770 Length=1537 Score = 120 bits (132), Expect = 2e-22 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| |||||||| ||||| || || || || || ||||| | || || || | Sbjct 1095 AAAATGCAAATTTTCGTCAAAACACTAACTGGCAAGACCATCACCTTAGAGGTGGAGCCA 1036 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| |||||| | ||| || ||| || ||||||||| | || |||||| Sbjct 1035 TCTGACACCATTGAAAATGTCAAAGCTAAGATTCAGGATAAAGAAGGTATTCCACCAGAT 976 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 ||||| ||| | || || ||||| |||||| | ||||| | ||| ||| || ||| ||| Sbjct 975 CAACAACGTCTTATTTTCGCCGGAAAACAATTAGAAGATGGACGTACTCTATCCGACTAC 916 Query 23788 AACATACAAAAAGAGTCCACA 23808 || || |||||||| || ||| Sbjct 915 AATATTCAAAAAGAATCAACA 895 >seq21876 Length=2391 Score = 113 bits (124), Expect = 3e-20 Identities = 125/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| ||||| | || || ||||| |||||| | ||||| || | | Sbjct 740 ATGCAAATCTTCGTAAAAACTTTGACAGGGAAAACTATCACTTTAGAAGTCGAGCCATCC 799 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||| | | ||| || ||| ||||| |||||| | || ||||||||| Sbjct 800 GACACTATTGAGAACGTCAAAGCTAAGATTCAGGACAAGGAAGGTATTCCTCCAGATCAA 859 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTT 23777 || |||||||| || || ||||| |||||||| |||| ||| ||||| Sbjct 860 CAACGTTTAATCTTCGCTGGCAAGCAACTGGAGGACGGACGGACTTT 906 Score = 102 bits (112), Expect = 5e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| ||||| | || || || || ||||| || |||||||| | | Sbjct 512 ATGCAAATCTTCGTAAAAACTTTGACTGGCAAGACTATCACCCTGGAAGTTGAGCCGTCT 571 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | || || || ||||| || || | || |||||||| Sbjct 572 GACACCATCGAAAACGTTAAGGCTAAGATCCAGGACAAGGAGGGAATTCCCCCAGATCAG 631 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||||||||| || |||||||| ||| ||||||| | || || || |||||||||| Sbjct 632 CAGCGTTTAATCTTCGCCGGCAAGCAATTGGAAGATGGCCGTACCTTGTCCGATTACAAC 691 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || || || || || | ||||| || Sbjct 692 ATTCAGAAGGAATCAACGCTTCATTTGGT 720 >seq138766 Length=1258 Score = 104 bits (114), Expect = 2e-17 Identities = 165/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 23609 AAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCA 23668 ||||||| || ||||| ||||| || ||||||||||| || || || || || || | Sbjct 638 AAATGCAAATCTTCGTAAAAACACTAACGGGAAAAACAATAACACTGGAGGTGGAGCCAT 697 Query 23669 CGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || | |||||| ||| | || | ||||| || ||||| || | || |||||| Sbjct 698 CCGAAAATGTTGAGAATGTCAAGGC-CAAAATACAGGATAAAGAGGGGATTCCACCAGAT 756 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATT 23785 || ||| | | || ||||| || || || || || || | | | |||||| ||||| Sbjct 757 CAGCAGAGACTGATCTTTGCTGGTAAGCAGCTTGAGGATGGAAGAACACTTT--CCGATT 814 Query 23786 ACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 |||| ||||| |||||||| ||| | ||| | ||| | ||| | || ||||| Sbjct 815 ACAATATACAGAAAGAGTCTACAATCCATCTTGTTCTGAGGCTTCGTGGAGG 866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337436801115368