Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq119770 158 3e-33 seq21876 149 1e-30 seq123102 145 2e-29 seq87489 127 5e-24 seq138766 120 7e-22 >seq119770 Length=1537 Score = 158 bits (174), Expect = 3e-33 Identities = 170/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | || || ||||| || || ||||||||||| | |||||| |||| | ||| Sbjct 871 ACGTAGACGCAATACCAGGTGAAGTGTTGATTCTTTTTGAATATTGTAGTCGGATAGAGT 930 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||||| || || || ||||| ||||| |||||||| || || |||||||| Sbjct 931 ACGTCCATCTTCTAATTGTTTTCCGGCGAAAATAAGACGTTGTTGATCTGGTGGAATACC 990 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| || || || ||||| || ||| ||| |||||||| || | ||||| ||||| Sbjct 991 TTCTTTATCCTGAATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGCTCCACCTCTAA 1050 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| |||||||| || | ||||| | ||| | ||||||||| Sbjct 1051 GGTGATGGTCTTGCCAGTTAGTGTTTTGACGAAAATTTGCATTTT 1095 >seq21876 Length=2391 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | |||||| | || || || ||||| || || | |||||||||| ||| || Sbjct 733 ACGTAGACGCAGGACCAAATGAAGCGTTGATTCCTTCTGAATGTTGTAATCGGACAAGGT 674 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | ||||| || |||||||| | || || || || || ||||| || Sbjct 673 ACGGCCATCTTCCAATTGCTTGCCGGCGAAGATTAAACGCTGCTGATCTGGGGGAATTCC 614 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| || |||||||||||| || | || || || | Sbjct 613 CTCCTTGTCCTGGATCTTAGCCTTAACGTTTTCGATGGTGTCAGACGGCTCAACTTCCAG 554 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| ||||||||||||| ||| | |||||| Sbjct 553 GGTGATAGTCTTGCCAGTCAAAGTTTTTACGAAGATTTGCAT 512 Score = 122 bits (134), Expect = 2e-22 Identities = 130/172 (76%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 225542 CGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGG 225601 ||| |||||| | || || || || ||||| ||||||||||| | |||||||| || | Sbjct 911 CGGACAAAGTCCGTCCGTCCTCCAGTTGCTTGCCAGCGAAGATTAAACGTTGTTGATCTG 852 Query 225602 GCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTT 225661 | ||||||||||||||||| || ||||| || || || || ||||| || | | Sbjct 851 GAGGAATACCTTCCTTGTCCTGAATCTTAGCTTTGACGTTCTCAATAGTGTCGGATGGCT 792 Query 225662 CCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | || ||||| ||||| || || || ||||||||||||| ||| | |||||| Sbjct 791 CGACTTCTAAAGTGATAGTTTTCCCTGTCAAAGTTTTTACGAAGATTTGCAT 740 >seq123102 Length=1410 Score = 145 bits (160), Expect = 2e-29 Identities = 167/222 (75%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || | ||| || || ||||| ||||| | |||||||||| || || Sbjct 596 CGCAGACGCAGAACCAAGTGAAGTGTTGATTCCTTTTGAATGTTGTAATCGGATAATGTG 655 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || |||||||| || ||||| || | ||||||||||| || ||||| ||| Sbjct 656 CGTCCATCCTCAAGCTGCTTGCCGGCGAAAATTAAACGTTGTTGGTCTGGGGGAATGCCT 715 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCT-TCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||| ||||| || |||||||| | | | |||||||| || || | ||| || || || Sbjct 716 TCCTTATCTTGAAT-TTTTGCTTTAACGTTCTCGATGGTATCCGAAGGTTCAACTTCCAA 774 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || ||||| ||||| ||||| | || | |||||| Sbjct 775 TGTGATAGTTTTGCCAGTCAATGTTTTAACAAATATTTGCAT 816 >seq87489 Length=1006 Score = 127 bits (140), Expect = 5e-24 Identities = 134/175 (77%), Gaps = 1/175 (1%) Strand=Plus/Plus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| |||| || |||||| |||| | ||||| ||||| || ||||| ||| | ||||| Sbjct 224 CAAATTTATAATGTTATTGTTACATCTCATGCATTTGTAATAATTTTTTTTATAGTTATA 283 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || |||| || || || || ||||||||||| ||||| | || | || || |||||| Sbjct 284 CCAATTATAATTGGAGGATTTGGAAATTGATTAATTCCTCTTATATTGGGAGCCCCTGAT 343 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTC-CTTA 7725 || |||||||| | | || ||||| |||||||||||| |||| ||||| |||| Sbjct 344 ATAGCTTTTCCCCGAATAAATAATATGAGTTTTTGATTATTACCTCCTTCTCTTA 398 Score = 102 bits (112), Expect = 2e-16 Identities = 82/99 (83%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| ||||||||||||||||| ||||||||||| || | ||||| || ||||| |||| Sbjct 877 TTCTGGATGACCAAAAAATCAAAATAAATGTTGGTATAAAATAGGGTCTCCTCCTCCTGC 818 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 ||| |||||||| |||||| ||||||| ||| ||||| Sbjct 817 TGGGTCAAAAAATGAAGTATTTAAATTTCGATCTGTTAA 779 >seq138766 Length=1258 Score = 120 bits (132), Expect = 7e-22 Identities = 161/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| ||||| ||||| |||| || || ||||| || | ||||||||||| | || Sbjct 861 ACGAAGCCTCAGAACAAGATGGATTGTAGACTCTTTCTGTATATTGTAATCGGAAAGTGT 802 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||| ||||| || |||||||| ||||| ||||| |||| || || || || ||||| || Sbjct 801 TCTTCCATCCTCAAGCTGCTTACCAGCAAAGATCAGTCTCTGCTGATCTGGTGGAATCCC 742 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || || || || || || ||| ||| || | | || || | ||||| || | Sbjct 741 CTCTTTATCCTGTATTTTGGCCTTGACATTCTCAACATTTTCGGATGGCTCCACCTCCAG 682 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTT 225715 || || || || ||||| | ||||||| ||| | |||||||| Sbjct 681 TGTTATTGTTTTTCCCGTTAGTGTTTTTACGAAGATTTGCATTT 638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1190406673617924