Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_030953.1 Length=170650 Score E Sequences producing significant alignments: (Bits) Value seq14905 150 2e-31 seq2788 114 1e-20 seq2551 95.1 1e-14 >seq14905 Length=119551 Score = 150 bits (166), Expect = 2e-31 Identities = 143/183 (78%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 9561 TTACAAACTCTCGGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGA 9620 ||||| |||| || || ||||||| ||| ||||| ||||||||||||| |||| || Sbjct 42459 TTACAGGCTCTGAGTGAAAGTACGAGTGATCACGTCCTGCTGCTGTTCCGGCGTCAACGA 42400 Query 9621 GTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 9680 |||||| || || || || || || |||||||| |||| ||| ||||| || || ||||| Sbjct 42399 GTTAAAACGCACGGCGTACCCCGAGACACGGATAGTCAACTGAGGATACTTCTCAGGATG 42340 Query 9681 CTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACC 9740 || | |||||||| || || |||||||||| ||||||||||| || || || || || Sbjct 42339 TTTTATCGCATCTTCGAGCGTCTCACGACGCATGACGTTAACGTTAAGATGCTGCCCCCC 42280 Query 9741 TTC 9743 ||| Sbjct 42279 TTC 42277 >seq2788 Length=136445 Score = 114 bits (126), Expect = 1e-20 Identities = 284/431 (66%), Gaps = 0/431 (0%) Strand=Plus/Plus Query 88508 TGAACGCCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTTTTCAAA 88567 || ||||| || ||||| ||||||| |||||| |||| || || ||| ||||||| | Sbjct 19280 TGCACGCCGTAGTCCATGTGACGAACGCGGTTGCCTTCAACACCACGGTTGTTTTTCAGA 19339 Query 88568 ACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCA 88627 || || || |||||||||||| ||||| || || || | || ||||| ||||| Sbjct 19340 ACCAGCAGGCTTTCAACTTCCAGGTGCCACATCGGGTAGAACAGGGTCGCAGCACCGCCG 19399 Query 88628 CGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATGTTTCCAAAAAGGAATA 88687 || | || ||||| || || |||||||| || ||||| || || || | || || ||| Sbjct 19400 CGCACGCCGCCCTGAGAGCAGGATTTAACCGCCGTCTGGAAGTGCTTATAGAACGGGATA 19459 Query 88688 ACACCAGTATGACGTACTTCACCCATGCCAATCTTAGAACCTTCGGCACGAATCATACCA 88747 || ||||| | ||||||| || |||| ||| ||||| || ||| Sbjct 19460 CAGCCGGTATGGAATGCTTCACCGCCGCGAATCGGGCTACCCAGCGCACGGATGCGGCCA 19519 Query 88748 ACGTTAATACCAATTCCAGCGCGTTTGGAGATATACTCAACAATTGAAGCAGAAGCCTTA 88807 |||| || || || || ||||| | || | || | || || | || | | Sbjct 19520 GCGTTGATGCCGATACCTGCGCGCTGTGAAACGTATTTCACGATGGCGCTGGAGGTCGCG 19579 Query 88808 TTGATAGACTTTAATGAATCACCTGCCTCAATAACAACGCATGAACTAAACTGTCGAGTT 88867 ||||| || | | || || ||| || | ||||| || || ||||| ||||| Sbjct 19580 TTGATGGAGTCCAGGCTGTCGCCGCACTCGATCAGTACGCAAGAGCTGAACTGGCGAGTC 19639 Query 88868 GGAGTACGACAACCAGCCATAATAGGAGTTGGCAATGAAATCTGTCGAGTAGATACTGCT 88927 || || || || | |||||| || || |||| ||||||| || || || || Sbjct 19640 GGGGTGCGCACGCCGGACATAATTGGCGTAGGCAGAGAAATCTTGAAGGTTGAAACCGCA 19699 Query 88928 TCATAAAAACG 88938 ||||| ||||| Sbjct 19700 TCATAGAAACG 19710 >seq2551 Length=53185 Score = 95.1 bits (104), Expect = 1e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 9574 GTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 9633 ||||||||||| | || ||||| |||||||||| || || ||||| ||||| || Sbjct 37103 GTAAAGGTACGGGTAATCACGTCCTGCTGCTGTTCTTTGGTTAGTGAGTTGAAGCGTACC 37044 Query 9634 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 9693 ||||| || || || ||||| |||||||| || |||| || |||| | | || || Sbjct 37043 GCATAGCCTGAAACGCGGATAGTCAGCTGAGGGAATTTCTCAGGATTTTCCATGGCCTCC 36984 Query 9694 TCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTC 9743 ||| | || || || |||||||||||||| || ||||| ||||| Sbjct 36983 AGCAGCATCTCGCGGTTCATTACGTTAACGTTCAGATGCTGACCGCCTTC 36934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545003094477600