Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_031020.1 Length=163201 Score E Sequences producing significant alignments: (Bits) Value seq2551 170 2e-37 seq7931 118 1e-21 seq14905 100 3e-16 >seq2551 Length=53185 Score = 170 bits (188), Expect = 2e-37 Identities = 148/184 (80%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 52708 TACATAGCTTCAGTAAATGTACGAGAAATTACATCACGCTGTTGTTCTTTGGTCAGGGAG 52767 |||| | || |||||| ||||| | ||| || || |||| ||||||||||| || ||| Sbjct 37115 TACAGCGTTTTAGTAAAGGTACGGGTAATCACGTCCTGCTGCTGTTCTTTGGTTAGTGAG 37056 Query 52768 TTAAAGCGAACAGCATAACCAGAAACACGGATAGTCAACTGTGGGTATTTTGTAGGGTCT 52827 || ||||| || ||||| || ||||| |||||||||| ||| ||| |||| ||| | | Sbjct 37055 TTGAAGCGTACCGCATAGCCTGAAACGCGGATAGTCAGCTGAGGGAATTTCTCAGGATTT 36996 Query 52828 TCCATCGCTTCAAGCAACATTTCACGATTCATTACGTTAACGTTCAGGTGCTGACCGCCT 52887 ||||| || || |||| ||| || || |||||||||||||||||||| |||||||||||| Sbjct 36995 TCCATGGCCTCCAGCAGCATCTCGCGGTTCATTACGTTAACGTTCAGATGCTGACCGCCT 36936 Query 52888 TCGA 52891 |||| Sbjct 36935 TCGA 36932 >seq7931 Length=164496 Score = 118 bits (130), Expect = 1e-21 Identities = 76/83 (92%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 66401 AATGGCACACCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTAT 66460 ||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 108954 AATGGTACGCCCTACAGGGCTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTAT 108895 Query 66461 CCAGCTGAGCTAAGAGTGCATTA 66483 ||| |||||||||| | |||||| Sbjct 108894 CCAACTGAGCTAAGGGCGCATTA 108872 >seq14905 Length=119551 Score = 100 bits (110), Expect = 3e-16 Identities = 129/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 52719 AGTAAATGTACGAGAAATTACATCACGCTGTTGTTCTTTGGTCAGGGAGTTAAAGCGAAC 52778 ||| || ||||||| || || || |||| ||||| |||| |||||||| || || Sbjct 42447 AGTGAAAGTACGAGTGATCACGTCCTGCTGCTGTTCCGGCGTCAACGAGTTAAAACGCAC 42388 Query 52779 AGCATAACCAGAAACACGGATAGTCAACTGTGGGTATTTTGTAGGGTCTTCCATCGCTTC 52838 || || || || ||||||||||||||||| || || || ||| | || ||||| || Sbjct 42387 GGCGTACCCCGAGACACGGATAGTCAACTGAGGATACTTCTCAGGATGTTTTATCGCATC 42328 Query 52839 AAGCAACATTTCACGATTCATTACGTTAACGTTCAGGTGCTGACCGCCTTCGACACGA 52896 | | | |||||| ||| ||||||||||| || ||||| || ||||| || ||| Sbjct 42327 TTCGAGCGTCTCACGACGCATGACGTTAACGTTAAGATGCTGCCCCCCTTCTACGCGA 42270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521207724623760