Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_031021.1 Length=41224 Score E Sequences producing significant alignments: (Bits) Value seq139038 154 4e-33 >seq139038 Length=11747 Score = 154 bits (170), Expect = 4e-33 Identities = 532/822 (65%), Gaps = 16/822 (2%) Strand=Plus/Plus Query 17493 TGGTAGGCCAAAACTTCCTTATGTTCGACCGACCAGTTATTAAGCATTGCTGGGGATTCG 17552 |||| |||||||||||| | ||||||||| |||| || | | | || ||||| ||| Sbjct 6931 TGGTGGGCCAAAACTTCTTAATGTTCGACAGACCTGTGCTGTCGAACTGTTGGGGTATCG 6990 Query 17553 AACTCCTGGTAGAAAACATTATAGACACTATGATAGTCGCGTTCCGACATGCCCTCCCGG 17612 ||| || |||| || ||||| ||| | | || | |||| | || | |||| Sbjct 6991 CGATCCCACCCGAGCACATCATCGACACAATGGTCGAGGCCTACCGATACGCGTTGCCGG 7050 Query 17613 GTTCACTGGCCGCGCTGTGTGAGGTTTTAAACATTGACGCA-AGCATGGCTAAGGATAAA 17671 |||| || | || || || || ||||| || || ||| | || || ||||| Sbjct 7051 GTTCGCTCGAGAAACTCTGCGAAGTGCTAAACGTTCCCGTGGAGC-TCGCCAAAGATAAG 7109 Query 17672 CGCGGCAAGGCGCTCATACAGCGGTTCAGTAAGCCTACGCCTAAGAACTATAAGATTCGA 17731 || |||||| | || ||||| ||| |||| || ||||||||||| || ||||| || Sbjct 7110 GCGGGTAAGGCGTTGATCCAGCGCTTCTGTAAACCCACGCCTAAGAATTACAAGATACGG 7169 Query 17732 CGATATACCGCCAATACCCACCCAAAAGAGTGGGCAGAATTTATCGCATACGCAAAAAGC 17791 || || || | || ||||| |||| ||| | ||| | | |||||| || Sbjct 7170 CGCTACACAAAGCAGACGCACCCCGAAGAATGGAAACGCTTTGTAGACTACGCACGGCGC 7229 Query 17792 GACATTACGTCTATGCGTGAAGTGTATAAGAAAATGCCGAAGTGGGGGAATT---CTGAG 17848 || || || ||||||||||| | | | | |||| | | |||| | | ||| Sbjct 7230 GATATCACTTCTATGCGTGAGGCCTTCTACCGACTGCCAACAT---GGAACTCCACGGAG 7286 Query 17849 TTCGAAGACCGCGTGCT-GTGGTTAGACCAAGTAATTAACGACCGCGGATTTAAGGTTGA 17907 | ||| |||| | | ||| || ||||| | ||||| ||||| || ||| | || || Sbjct 7287 ATTGAAAACCGGATCTTAGTGCTT-GACCAGATCATTAATGACCGAGGGTTTTACGTCGA 7345 Query 17908 CGTTGCCCTCGCTGAGGCCGCGATTGAAGCAGTGACGCGCCACAAGGAAGAGCTACAGGA 17967 | || ||| |||| | | || | | || ||| |||| || | | Sbjct 7346 TACCGAGCTTGCTCGTTGCGCGGTACAGGCCATACAGGAGCATAAGAAAGAACTTAAAGC 7405 Query 17968 AGAAGCCCAACGCAAATACGGC---GGTTCACTAACCGGCAAAGACTTCTTGCCTATTTT 18024 || || |||||||||| ||| || ||||| || ||| |||| || Sbjct 7406 CGAGGCTATGGCCAAATACGGCTCAGGT---CTTACCGGTGCGGATTTCCTGCCGGCATT 7462 Query 18025 ACAGGAACTGGCGCCGGCGCACCGCATTCACAACGCACAGAAGTCAACACTAAACGATTT 18084 | | || || ||||||||| | | | || || |||||| | | || | Sbjct 7463 GCGCGGTCTAGCCCCGGCGCACACCGTACCGAATGCCCAGAAGGCGGTCTTGCTGGACCT 7522 Query 18085 GCTGGCGGATGAGGATTTACCGGACGACGCCCGCACTATTATCGAGATGCGTCTCGGGGC 18144 ||| | ||| ||| | || ||||| |||||| ||| || || ||||| ||||| || Sbjct 7523 GCTAGAAGATCCAGATCTCCCAGACGAAGCCCGCGTTATCATTGAAATGCGCCTCGGCGC 7582 Query 18145 TGCTTCTACTGCATCGACGAAATACGCGCCGTTGCTGTTAGGCCGTTCTTCAGATGACCG 18204 || || || |||||||| |||||| ||| | | || | || | || | ||| Sbjct 7583 AGCGTCAACGGCATCGACAAAATACAAGCCACTTATCGAGGGTCTGTCCGCCGACGGCCG 7642 Query 18205 CCGCCGTGGTTGCCTGCAATACGGAGGAGCGAAGCGAACACTGCGATGGGCCGGGAAAGG 18264 ||||| ||||| || ||||| || || || |||||||| || ||||||| ||| ||| Sbjct 7643 GCGCCGGGGTTGTCTTCAATATGGTGGCGCCAAGCGAACCCTAAGATGGGCTGGGCGAGG 7702 Query 18265 TTTTCAGCCGCAAAACCTGGCGCGCGGGTATTATCACGACGA 18306 ||||| ||||| || || || || |||||||| |||||||| Sbjct 7703 CTTTCAACCGCAGAATCTTGCACGTGGGTATTACCACGACGA 7744 Score = 131 bits (144), Expect = 4e-26 Identities = 633/991 (64%), Gaps = 38/991 (4%) Strand=Plus/Plus Query 21264 TAACGTGGTATGCACTAACTACGAGGTTATCG---AATGGCTTATTGACTACTACGGCAA 21320 ||||||||| || ||||||||| ||||| ||||| | | | ||| || Sbjct 9779 TAACGTGGTGTGTTGTAACTACGA---TATCGCAGAATGGTTGGTGCAATACCTTGGT-- 9833 Query 21321 AGACGACTGGCCTTTTACCGTTATAGTTGCCGATGAAAGCACGAAGCTTAAATCGTTCCG 21380 ||||| ||||| ||||||||| | |||||||| ||| || |||||||| |||||||| Sbjct 9834 -GACGATTGGCCCTTTACCGTTGTCGTTGCCGACGAATCGACAAAGCTTAAGTCGTTCCG 9892 Query 21381 CAGCCGTTCGGGCGGGAGCAAACGGGCAAGGGCGCTTAGCAAGGTTGCGTTCGGTAAGGT 21440 | ||| |||||| ||||| || | || ||| |||| | || | |||| Sbjct 9893 AACGCGT---GGCGGGTCTAAACGCGCCCGTGCTCTTGGCAAAATCGC---CCATAAGAA 9946 Query 21441 TAA--GCGTT----TC----ATTA----ACCTTACCGGG-ACACCATCGCCAAACGGCTT 21485 || |||| || ||| | |||| |||| || || | ||||||| | Sbjct 9947 AAAAGGCGTCAAAGTCCGGTATTGGTGGAACTTAACGGGTACGCCCGCTACAAACGGGCT 10006 Query 21486 AAAAGATTTGTGGGGTCAGAACTGGTTTATCGACGCAGGTGAGCGCCTTGGTTCTTCGTA 21545 || ||| | |||||||||||||||||||| || || || | ||| || || | || | Sbjct 10007 CAAGGATCTTTGGGGTCAGAACTGGTTTATAGATGCTGGCGCGCGTCTGGGCACATCTTT 10066 Query 21546 CACCGCATTCACCGACCGCTGGTTTAATTCAGTACAGAAAGGAAAGTCGGCGATGGCACG 21605 |||||| |||| ||||| | || | || || |||| | | || | | | Sbjct 10067 CACCGCGTTCAAAGACCGGTATTTCACCTCGAAGCAAAAAGCCGA--CAGCAAATACGCC 10124 Query 21606 GGAGTAC-CACGCCCGCCCCG-GCGCGGATAACGAGATTCACCAGAAGATGAAGGATATC 21663 | || | || ||| ||| | | || | || || | || || ||| Sbjct 10125 GTAGACCTCATACCCATGCCGAGATCAGAACAGCGCATACATCGTGCATTGGCCGACATC 10184 Query 21664 AGCCTGACCATTGATGCTGCCGAGTGGTTCGGTTGTGAAGCGCCGGTTATCGTACCGGTT 21723 ||||| | || || | | | ||||||||||||| | || || | || ||| | Sbjct 10185 TCGCTGACGGTAGACGCGTCTAAATACTTCGGTTGTGAAGAGGCGATTGTAGTTCCGCGT 10244 Query 21724 GAGATTGACCTGCCTAAGAAAGCACGCCAGGCTTACATCGATATGGAGGAGAAGTTATTC 21783 | | ||||||| ||||| | | | || |||||||| | || | | Sbjct 10245 CCGGTCTACCTGCCCCGTAAAGCGCAAAAAGTCTATGACGATATGGTGAAGCTGCTGAAG 10304 Query 21784 GCGGAGCTAGA-AAGCGGAGAAGTCGAAGCGGCTAATGCCGCTGCTAAAACGTCGAAATG 21842 || || || || || ||| ||||||| || | |||||| || || || ||| | ||||| Sbjct 10305 GCCGATCTCGATGAGGGGA-AAGTCGACGCCGTTAATGCGGCGGCCAAGACGGCTAAATG 10363 Query 21843 CCTCCAGATTGCCTCCGGTGCTGTATACGTATCAGGGCCAGATGGCGAAGCAACCAAAGA 21902 | | ||||| || |||||||| || || || | | | || || || | || || Sbjct 10364 CTTGCAGATAGCTTCCGGTGCCGTTTATGTGACCGACGCCGACGGTGAGCCGACAGGTGA 10423 Query 21903 CTGGGAGAAAGTGCACGACACGAAACTGGACGCACTGGAGTCAATTGTGGAGGAGTTGCA 21962 ||||||| | || || ||| |||||||| || ||||| ||| || ||| | | Sbjct 10424 CTGGGAGCTTATTCATAACGAGAAGCTGGACGCGCTCGAGTCTATTTATGAAGAGCTCAA 10483 Query 21963 GGGCGCGCCGTTGCTGGTGGCGTATCAGTTTAAGCACGAACTTGAGCGCATTCTTAAGCG 22022 || ||||| || | ||||| ||| | | | || || | || ||||| || ||| Sbjct 10484 CGGTGCGCCACTGTTAGTGGCCTATTACTATCGCCATGACCGGGAACGCATCCTGAAGAA 10543 Query 22023 TTTCCCACAGGCGCAGGCGTTCGCCAAAGGTGCCAAGGGCAATAAGC-AGATGGAAGCGT 22081 ||||| |||| ||| | | ||||||| || |||| || | || || || Sbjct 10544 ATTCCCCGAGGCCGTGGCACTGGGCAAAGGT-AAAACCGCAACCCGCAATATCGAGCTGT 10602 Query 22082 GGAACCGCGGAGAGATACCTATGCTCCTGATACACCCAGCCTCCGCGGGTCACGGGCTGT 22141 |||||| || |||| |||||||| || ||||| ||| ||| || ||||| || Sbjct 10603 GGAACCAAGGGAAGATCCCTATGCTATTGGCTCACCCGGCCAGCGCCGGGCACGGCCTTA 10662 Query 22142 CGCTACAACACGGCGGGCACCACATGGCCTTTATGAGTCAGGGGTGGAACCTGGAACATT 22201 | ||| ||||||| ||||| ||||| || | ||| | ||||||| ||||| | | Sbjct 10663 ACTTGCAAGACGGCGGACACCATCTGGCCGTTTTTAGTGATACGTGGAACTTGGAATACT 10722 Query 22202 ATCTGCAGGTTATCGAGCGCATAGGTCCGGT 22232 || |||| | |||| || ||||| || || Sbjct 10723 ATTCGCAGATCGTCGAACGAATAGGGCCAGT 10753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 131577583554872